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LOCUS FN557309 1804 bp RNA linear VRL 09-SEP-2010
DEFINITION HIV-1 M:A3 08GQ182 partial pol gene for gag-pol fusion polyprotein
precursor, isolate 08GQ182
ACCESSION FN557309
VERSION FN557309.1 GI:306517594
KEYWORDS .
SOURCE HIV-1 M:A3 08GQ182
ORGANISM HIV-1 M:A3 08GQ182 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Djoko,C.F., Wolfe,N.D., Vidal,N., Tamoufe,U., Montavon,C.,
Lebreton,M., Pike,B.L., Fair,J., Mbacham,W.F., Benito,A.,
Rimoin,A.W., Saylors,K., Mpoudi-Ngole,E., Grillo,M.P. and
Peeters,M.
TITLE HIV Type 1 pol Gene Diversity and Genotypic Antiretroviral Drug
Resistance Mutations in Malabo, Equatorial Guinea
JOURNAL AIDS Res. Hum. Retroviruses 26 (9), 1027-1031 (2010)
PUBMED 20718620
REFERENCE 2 (bases 1 to 1804)
Show all sequences for reference 2
AUTHORS Vidal,N.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2009) Vidal N., UMR145, IRD, 911 avenue
Agropolis, 34394 Montpellier cedex 5, FRANCE
FEATURES Location/Qualifiers
source 1..1804
/organism="HIV-1 M:A3 08GQ182"
/mol_type="genomic RNA"
/isolate="08GQ182"
/db_xref="taxon:690048"
/country="Equatorial Guinea"
gene <23..>1804
/gene="pol"
CDS <23..>1804
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="gag-pol fusion polyprotein precursor"
/protein_id="CBH29272.1"
/db_xref="GI:306517595"
/translation="FFRENLAFQQGKAREFSSEQASANSPTSRALGDGRRDNLLXEAG
AAGQGTTSFSFPQITLWQRPVVTVRIGXQLKEALLDTGADDTVLEDINLPGKWKPKMI
GGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIE
TVPVTLKPGMDGPKVKQWPLTEEKIKALTAICKEMEEEGKISKIGPENPYNTPVFAIK
KKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDK
DFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQYSMTKILEPFRLQNPEIII
YQYMDDLYVGSDLEIGQHRTKIEELRAHLLTWGFTTPDKKHQKEPPFLWMGYELHPDK
WTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLT
EEAELELAENREILKDPVHGVYYDPSKDLVAEIQKQGPDQWTYQIYQEPFKNLKTGKY
AKKRSAHTNDVRQLVEVVQKVXTESIVIWGKTPKFKLPIQKETWETWWMEYWQATYIP
EWEFVNTPPLVKLWYQLEKDPIAGAETF"
mat_peptide 188..484
/gene="pol"
/product="protease"
mat_peptide 485..>1804
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 682 a 319 c 399 g 400 t 4 other
ORIGIN
1 actgcactga gagacaggct aattttttag ggaaaatctg gccttccagc aagggaaggc
61 cagggaattt tcctcagagc aggccagtgc caacagcccc accagcagag ctcttgggga
121 tgggagaaga gataacctcc tcyccgaagc aggagcagcg ggacagggaa caacctcctt
181 tagtttccct caaatcactc tttggcaacg acccgttgtc acagtaagaa taggagraca
241 actaaaagaa gctctattag atacaggagc agatgataca gtattagaag acataaattt
301 gccaggaaaa tggaaaccaa aaatgatagg gggaattgga ggttttatca aagtaagaca
361 atatgatcag atacttatag aaatttgtgg aaaaaaggct ataggtacgg tattggtagg
421 acctacacct gtcaacataa ttggaaggaa catgttgact cagattggtt gtactttaaa
481 ttttccaatt agtcctattg aaactgtacc agtaacatta aagccaggaa tggatggacc
541 aaaggttaaa caatggccat tgacagaaga aaaaataaaa gcattaacag caatctgtaa
601 agagatggaa gaggaaggaa aaatttcaaa aattgggcct gaaaatccat acaatactcc
661 agtatttgct ataaagaaaa aagacagcac taaatggaga aaattagtag atttcagaga
721 gctcaataag agaactcagg acttctggga agttcaatta ggaataccgc acccagcggg
781 tttgaaaaag aaaaaatcaa taacagtact ggatgtaggg gacgcatatt tttcagttcc
841 tttagataaa gactttagaa agtatactgc atttaccata cccagtataa acaatgagac
901 accaggagtc agatatcagt acaatgtgct accacaggga tggaaaggat caccagcaat
961 attccaatat agcatgacaa aaatcttaga gccctttaga ctacaaaatc cagaaataat
1021 tatctatcaa tatatggatg acttatatgt aggatctgat ttagaaatag ggcaacatag
1081 aacaaagata gaggagctaa gggctcatct attgacgtgg ggatttacta caccagacaa
1141 aaagcatcag aaggaacctc catttctttg gatgggatat gaactccatc ctgacaaatg
1201 gacagtccaa cctatacagt tgccagacaa agacagctgg actgtcaatg atatacagaa
1261 attagtggga aaattaaatt gggcaagtca gatttatgca ggaattaaag taaagcagct
1321 gtgtaaactc cttaggggag ccaaagcact aacagatata gtaaccttga ctgaagaagc
1381 agaattagaa ttggcagaga acagggaaat tctaaaagac cctgtgcatg gggtgtatta
1441 tgacccatca aaagacttag tagcagaaat acagaaacaa gggccagacc aatggacata
1501 ccaaatctac caagagccat ttaaaaatct gaaaacaggg aaatatgcaa aaaagaggtc
1561 tgctcacact aatgatgtaa gacaattagt agaagtggtg caaaargtgr gcacagaaag
1621 catagtaata tggggaaaga cccctaaatt taaactgccc atacagaagg aaacatggga
1681 aacatggtgg atggagtatt ggcaggctac ctatattcct gagtgggagt tcgtcaacac
1741 ccctcctcta gtaaaattat ggtaccagtt agagaaggac cccatagcag gagcagaaac
1801 tttc
//
last modified: Tue May 31 10:56 2022