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LOCUS	    FN557309		    1804 bp    RNA     linear	VRL 09-SEP-2010
DEFINITION  HIV-1 M:A3 08GQ182 partial pol gene for gag-pol fusion polyprotein
	    precursor, isolate 08GQ182
ACCESSION   FN557309
VERSION     FN557309.1 GI:306517594
KEYWORDS    .
SOURCE	    HIV-1 M:A3 08GQ182
  ORGANISM  HIV-1 M:A3 08GQ182 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1
            Show all sequences for reference 1
  AUTHORS   Djoko,C.F., Wolfe,N.D., Vidal,N., Tamoufe,U., Montavon,C.,
	    Lebreton,M., Pike,B.L., Fair,J., Mbacham,W.F., Benito,A.,
	    Rimoin,A.W., Saylors,K., Mpoudi-Ngole,E., Grillo,M.P. and
	    Peeters,M.
  TITLE     HIV Type 1 pol Gene Diversity and Genotypic Antiretroviral Drug
	    Resistance Mutations in Malabo, Equatorial Guinea
  JOURNAL   AIDS Res. Hum. Retroviruses 26 (9), 1027-1031 (2010)
  PUBMED    20718620
REFERENCE   2 (bases 1 to 1804)
            Show all sequences for reference 2
  AUTHORS   Vidal,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2009) Vidal N., UMR145, IRD, 911 avenue
	    Agropolis, 34394 Montpellier cedex 5, FRANCE
FEATURES             Location/Qualifiers
     source	     1..1804
		     /organism="HIV-1 M:A3 08GQ182"
		     /mol_type="genomic RNA"
		     /isolate="08GQ182"
		     /db_xref="taxon:690048"
		     /country="Equatorial Guinea"
     gene	     <23..>1804
		     /gene="pol"
     CDS	     <23..>1804
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag-pol fusion polyprotein precursor"
		     /protein_id="CBH29272.1"
		     /db_xref="GI:306517595"
		     /translation="FFRENLAFQQGKAREFSSEQASANSPTSRALGDGRRDNLLXEAG
		     AAGQGTTSFSFPQITLWQRPVVTVRIGXQLKEALLDTGADDTVLEDINLPGKWKPKMI
		     GGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIE
		     TVPVTLKPGMDGPKVKQWPLTEEKIKALTAICKEMEEEGKISKIGPENPYNTPVFAIK
		     KKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDK
		     DFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQYSMTKILEPFRLQNPEIII
		     YQYMDDLYVGSDLEIGQHRTKIEELRAHLLTWGFTTPDKKHQKEPPFLWMGYELHPDK
		     WTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLT
		     EEAELELAENREILKDPVHGVYYDPSKDLVAEIQKQGPDQWTYQIYQEPFKNLKTGKY
		     AKKRSAHTNDVRQLVEVVQKVXTESIVIWGKTPKFKLPIQKETWETWWMEYWQATYIP
		     EWEFVNTPPLVKLWYQLEKDPIAGAETF"
     mat_peptide     188..484
		     /gene="pol"
		     /product="protease"
     mat_peptide     485..>1804
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	682 a	 319 c	  399 g    400 t      4 other
ORIGIN
       1 actgcactga gagacaggct aattttttag ggaaaatctg gccttccagc aagggaaggc 
      61 cagggaattt tcctcagagc aggccagtgc caacagcccc accagcagag ctcttgggga 
     121 tgggagaaga gataacctcc tcyccgaagc aggagcagcg ggacagggaa caacctcctt 
     181 tagtttccct caaatcactc tttggcaacg acccgttgtc acagtaagaa taggagraca 
     241 actaaaagaa gctctattag atacaggagc agatgataca gtattagaag acataaattt 
     301 gccaggaaaa tggaaaccaa aaatgatagg gggaattgga ggttttatca aagtaagaca 
     361 atatgatcag atacttatag aaatttgtgg aaaaaaggct ataggtacgg tattggtagg 
     421 acctacacct gtcaacataa ttggaaggaa catgttgact cagattggtt gtactttaaa 
     481 ttttccaatt agtcctattg aaactgtacc agtaacatta aagccaggaa tggatggacc 
     541 aaaggttaaa caatggccat tgacagaaga aaaaataaaa gcattaacag caatctgtaa 
     601 agagatggaa gaggaaggaa aaatttcaaa aattgggcct gaaaatccat acaatactcc 
     661 agtatttgct ataaagaaaa aagacagcac taaatggaga aaattagtag atttcagaga 
     721 gctcaataag agaactcagg acttctggga agttcaatta ggaataccgc acccagcggg 
     781 tttgaaaaag aaaaaatcaa taacagtact ggatgtaggg gacgcatatt tttcagttcc 
     841 tttagataaa gactttagaa agtatactgc atttaccata cccagtataa acaatgagac 
     901 accaggagtc agatatcagt acaatgtgct accacaggga tggaaaggat caccagcaat 
     961 attccaatat agcatgacaa aaatcttaga gccctttaga ctacaaaatc cagaaataat 
    1021 tatctatcaa tatatggatg acttatatgt aggatctgat ttagaaatag ggcaacatag 
    1081 aacaaagata gaggagctaa gggctcatct attgacgtgg ggatttacta caccagacaa 
    1141 aaagcatcag aaggaacctc catttctttg gatgggatat gaactccatc ctgacaaatg 
    1201 gacagtccaa cctatacagt tgccagacaa agacagctgg actgtcaatg atatacagaa 
    1261 attagtggga aaattaaatt gggcaagtca gatttatgca ggaattaaag taaagcagct 
    1321 gtgtaaactc cttaggggag ccaaagcact aacagatata gtaaccttga ctgaagaagc 
    1381 agaattagaa ttggcagaga acagggaaat tctaaaagac cctgtgcatg gggtgtatta 
    1441 tgacccatca aaagacttag tagcagaaat acagaaacaa gggccagacc aatggacata 
    1501 ccaaatctac caagagccat ttaaaaatct gaaaacaggg aaatatgcaa aaaagaggtc 
    1561 tgctcacact aatgatgtaa gacaattagt agaagtggtg caaaargtgr gcacagaaag 
    1621 catagtaata tggggaaaga cccctaaatt taaactgccc atacagaagg aaacatggga 
    1681 aacatggtgg atggagtatt ggcaggctac ctatattcct gagtgggagt tcgtcaacac 
    1741 ccctcctcta gtaaaattat ggtaccagtt agagaaggac cccatagcag gagcagaaac 
    1801 tttc
//
last modified: Tue May 31 10:56 2022


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