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LOCUS FN554940 202 bp RNA linear VRL 30-SEP-2010
DEFINITION Simian immunodeficiency virus partial polyprotein, integrase region
1, isolate SIVcpzPttCP2686
ACCESSION FN554940
VERSION FN554940.1 GI:308026202
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1
Show all sequences for reference 1
AUTHORS Neel,C., Etienne,L., Li,Y., Takehisa,J., Rudicell,R.S., Bass,I.N.,
Ndong,I., Moudindo,J., Mebenga,A., Esteban,A., Van Heuverswyn,F.,
Liegeois,F., Kranzusch,P.J., Walsh,P.D., Sanz,C.M., Morgan,D.B.,
Ndjango,J.B., Plantier,J.C., Locatelli,S., Gonder,M.K.,
Leendertz,F.H., Boesch,C., Todd,A., Delaporte,E., Mpoudi Ngole,E.,
Hahn,B.H. and Peeters,M.
TITLE Molecular epidemiology of simian immunodeficiency virus infection
in wild-living gorillas
JOURNAL J. Virol. 84 (3), 1464-1476 (2010)
PUBMED 19906908
REFERENCE 2 (bases 1 to 202)
Show all sequences for reference 2
AUTHORS Etienne,L.
TITLE Direct Submission
JOURNAL Submitted (30-SEP-2009) Etienne L., UMR145 VIH/SIDA et Maladies
Associes, IRD, 911, av agropolis BP64501, Montpellier 34394, France
FEATURES Location/Qualifiers
source 1..202
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="SIVcpzPttCP2686"
/isolation_source="faeces"
/host="Pan troglodytes troglodytes"
/db_xref="taxon:11723"
/country="Cameroon"
gene <1..>202
/gene="polyprotein"
CDS <1..>202
/gene="polyprotein"
/codon_start="2"
/transl_table="1"
/protein_id="CBG76157.1"
/db_xref="GI:308026203"
/translation="KELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYTAGER
IVDIIATDIQTKELQKHILKIQK"
mat_peptide <1..>202
/gene="polyprotein"
/product="integrase"
BASE COUNT 94 a 26 c 42 g 40 t
ORIGIN
1 taaagaactt aaaaagatca ttggacaagt aagggatcaa gcagagcatt taaaaacagc
61 agtgcaaatg gcagtgttca ttcacaattt taaaagaaaa ggggggattg gggggtacac
121 tgcaggagag agaatagtag atattatagc aacagacata caaacaaaag aactacaaaa
181 acacatttta aaaattcaaa aa
//
last modified: Tue May 31 10:56 2022