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LOCUS	    FJ853541		    1466 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate H240 from Tanzania gag protein (gag) gene, partial
	    cds
ACCESSION   FJ853541
VERSION     FJ853541.1 GI:227057901
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1466)
            Show all sequences for reference 1
  AUTHORS   Geldmacher,C., Metzler,I.S., Tovanabutra,S., Asher,T.E.,
	    Gostick,E., Ambrozak,D.R., Petrovas,C., Schuetz,A., Ngwenyama,N.,
	    Kijak,G., Maboko,L., Hoelscher,M., McCutchan,F., Price,D.A.,
	    Douek,D.C. and Koup,R.A.
  TITLE     Minor viral and host genetic polymorphisms can dramatically impact
	    the biologic outcome of an epitope-specific CD8 T-cell response.
  JOURNAL   Blood.. 114(8); 1553-62 (2009)
  PUBMED    19542300
REFERENCE   2 (bases 1 to 1466)
            Show all sequences for reference 2
  AUTHORS   Geldmacher,C., Metzler,I.S., Tovanabutra,S., Asher,T.E.,
	    Gostick,E., Ambrozak,D.R., Petrovas,C., Schuetz,A., Ngwenyama,N.,
	    Kijak,G., Maboko,L., Hoelscher,M., McCutchan,F., Price,D.A.,
	    Douek,D.C. and Koup,R.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2009) Vaccine Research Center, National Institute
	    of Allergy and Infectious Diseases, 40 Convent Drive, Bethesda, MD
	    20892, USA
FEATURES             Location/Qualifiers
     source	     1..1466
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="H240"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Tanzania: Mbeya Region, southwest Tanzania"
		     /collection_date="2003"
		     /note="host HLA class 1 gene locus: A2301, A3601, B0702,
		     B5301, C0702, C0401"
     gene	     1..>1466
		     /gene="gag"
     CDS	     1..>1466
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACP18920.1"
		     /db_xref="GI:227057902"
		     /translation="MGARASILRGEKLDKWERIRLRPGGKKHYMLKHIVWASRELERF
		     ALNPGLLETSEGCKQIMRQLQPXLQTGTEELKSLFNTVATLYCVHEKIEVRDTKEALD
		     KVEEEQNKSNQATQQADGKVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSP
		     EVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPAA
		     PGQMREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGDIYKRWIILGLNKIVRMYSPVSI
		     LDIRQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRALGPG
		     ATLEEMMTACQGVGGPGHKARVLAEAMSQANTNIMMQRSNFKGPKRVIKCFNCGKEGH
		     LARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHNKGRPGNFLQNRPEPTA
		     PPAESFRFEETTPTLKQESKDREPLTSLKSLFGSDPLS"
BASE COUNT	532 a	 289 c	  357 g    279 t      9 other
ORIGIN
       1 atgggtgcga gagcgtcaat attaagaggc gaaaaattag acaaatggga aagaattagg 
      61 ttaaggccag ggggmaagaa acactatatg ctaaaacaca tagtatgggc aagcagggag 
     121 ctggaaagat ttgcactcaa ccctggcctt ttagaaacat cagaaggctg taaacaaata 
     181 atgagacarc tacaaccakc tcttcagaca ggaacagagg aacttaaatc cttattcaac 
     241 acagtagcaa ctctctattg tgtacatgaa aagatagagg tacgagacac caaggaagcc 
     301 ttagacaagg tagaggaaga acaaaacaaa agtaatcaag caacacagca ggctgacgga 
     361 aaggtcagtc agaattaccc tatagtgcag aatcttcaag ggcaaatggt acatcaggct 
     421 atatcaccta gaactttgaa tgcatgggta aaagtaatag aggaaaaggc ttttagccca 
     481 gaggtaatac ccatgtttac agcattatca gaaggagcca ccccacaaga tttaaacacc 
     541 atgttaaata cagtgggggg acatcaagca gccatgcaaa tgttaaaaga tacyatcaat 
     601 gaggaggctg cagaatggga taggttgcat ccagtmcatg cagggcctgc tgcaccaggc 
     661 caaatgaggg aaccaagggg aagtgacata gcaggaacaa ctagtaccct tcaggaacaa 
     721 atagcatgga tgacaagtaa cccacctgtt ccagtgggag acatctataa aagatggata 
     781 attctggggy taaataaaat agtgagaatg tatagccctg tcagcatttt ggacataaga 
     841 caagggccaa aggaaccctt tagagattat gtagatcggt tctttaaaac tttaagagct 
     901 gaacaagcta cacaagaagt aaaaaattgg atgacagaca ccttgttagt ccaaaatgcg 
     961 aacccagatt gtaagaccat tttaagagca ttaggaccag gggctacatt agaagaaatg 
    1021 atgacagcat gtcagggagt gggaggacct ggccacaaag caagagtgtt ggctgaggca 
    1081 atgagccaag caaacacaaa cataatgatg cagagaagca ayttcaaagg ccctaaaaga 
    1141 gttatcaaat gcttcaactg tggcaaggaa gggcacttag ccagaaattg cagggcccct 
    1201 aggaaaaaag gctgttggaa atgtggaaar gaaggacacc aaatgaaaga ctgtactgag 
    1261 agacaggcta attttttagg gaagatctgg ccttcccaca acaaggggag gccagggaat 
    1321 ttcctacaga acagrccaga gccaacagcc ccaccagcag agagcttcag gttcgaggag 
    1381 acaaccccca ctctgaagca ggagtcgaag gacagggaac ccttaacttc cctcaaatca 
    1441 ctctttggca gcgacccctt gtctca
//
last modified: Tue May 31 10:56 2022


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