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LOCUS FJ853541 1466 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate H240 from Tanzania gag protein (gag) gene, partial
cds
ACCESSION FJ853541
VERSION FJ853541.1 GI:227057901
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1466)
Show all sequences for reference 1
AUTHORS Geldmacher,C., Metzler,I.S., Tovanabutra,S., Asher,T.E.,
Gostick,E., Ambrozak,D.R., Petrovas,C., Schuetz,A., Ngwenyama,N.,
Kijak,G., Maboko,L., Hoelscher,M., McCutchan,F., Price,D.A.,
Douek,D.C. and Koup,R.A.
TITLE Minor viral and host genetic polymorphisms can dramatically impact
the biologic outcome of an epitope-specific CD8 T-cell response.
JOURNAL Blood.. 114(8); 1553-62 (2009)
PUBMED 19542300
REFERENCE 2 (bases 1 to 1466)
Show all sequences for reference 2
AUTHORS Geldmacher,C., Metzler,I.S., Tovanabutra,S., Asher,T.E.,
Gostick,E., Ambrozak,D.R., Petrovas,C., Schuetz,A., Ngwenyama,N.,
Kijak,G., Maboko,L., Hoelscher,M., McCutchan,F., Price,D.A.,
Douek,D.C. and Koup,R.A.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2009) Vaccine Research Center, National Institute
of Allergy and Infectious Diseases, 40 Convent Drive, Bethesda, MD
20892, USA
FEATURES Location/Qualifiers
source 1..1466
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="H240"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Tanzania: Mbeya Region, southwest Tanzania"
/collection_date="2003"
/note="host HLA class 1 gene locus: A2301, A3601, B0702,
B5301, C0702, C0401"
gene 1..>1466
/gene="gag"
CDS 1..>1466
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ACP18920.1"
/db_xref="GI:227057902"
/translation="MGARASILRGEKLDKWERIRLRPGGKKHYMLKHIVWASRELERF
ALNPGLLETSEGCKQIMRQLQPXLQTGTEELKSLFNTVATLYCVHEKIEVRDTKEALD
KVEEEQNKSNQATQQADGKVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSP
EVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPAA
PGQMREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGDIYKRWIILGLNKIVRMYSPVSI
LDIRQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRALGPG
ATLEEMMTACQGVGGPGHKARVLAEAMSQANTNIMMQRSNFKGPKRVIKCFNCGKEGH
LARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHNKGRPGNFLQNRPEPTA
PPAESFRFEETTPTLKQESKDREPLTSLKSLFGSDPLS"
BASE COUNT 532 a 289 c 357 g 279 t 9 other
ORIGIN
1 atgggtgcga gagcgtcaat attaagaggc gaaaaattag acaaatggga aagaattagg
61 ttaaggccag ggggmaagaa acactatatg ctaaaacaca tagtatgggc aagcagggag
121 ctggaaagat ttgcactcaa ccctggcctt ttagaaacat cagaaggctg taaacaaata
181 atgagacarc tacaaccakc tcttcagaca ggaacagagg aacttaaatc cttattcaac
241 acagtagcaa ctctctattg tgtacatgaa aagatagagg tacgagacac caaggaagcc
301 ttagacaagg tagaggaaga acaaaacaaa agtaatcaag caacacagca ggctgacgga
361 aaggtcagtc agaattaccc tatagtgcag aatcttcaag ggcaaatggt acatcaggct
421 atatcaccta gaactttgaa tgcatgggta aaagtaatag aggaaaaggc ttttagccca
481 gaggtaatac ccatgtttac agcattatca gaaggagcca ccccacaaga tttaaacacc
541 atgttaaata cagtgggggg acatcaagca gccatgcaaa tgttaaaaga tacyatcaat
601 gaggaggctg cagaatggga taggttgcat ccagtmcatg cagggcctgc tgcaccaggc
661 caaatgaggg aaccaagggg aagtgacata gcaggaacaa ctagtaccct tcaggaacaa
721 atagcatgga tgacaagtaa cccacctgtt ccagtgggag acatctataa aagatggata
781 attctggggy taaataaaat agtgagaatg tatagccctg tcagcatttt ggacataaga
841 caagggccaa aggaaccctt tagagattat gtagatcggt tctttaaaac tttaagagct
901 gaacaagcta cacaagaagt aaaaaattgg atgacagaca ccttgttagt ccaaaatgcg
961 aacccagatt gtaagaccat tttaagagca ttaggaccag gggctacatt agaagaaatg
1021 atgacagcat gtcagggagt gggaggacct ggccacaaag caagagtgtt ggctgaggca
1081 atgagccaag caaacacaaa cataatgatg cagagaagca ayttcaaagg ccctaaaaga
1141 gttatcaaat gcttcaactg tggcaaggaa gggcacttag ccagaaattg cagggcccct
1201 aggaaaaaag gctgttggaa atgtggaaar gaaggacacc aaatgaaaga ctgtactgag
1261 agacaggcta attttttagg gaagatctgg ccttcccaca acaaggggag gccagggaat
1321 ttcctacaga acagrccaga gccaacagcc ccaccagcag agagcttcag gttcgaggag
1381 acaaccccca ctctgaagca ggagtcgaag gacagggaac ccttaacttc cctcaaatca
1441 ctctttggca gcgacccctt gtctca
//
last modified: Tue May 31 10:56 2022