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LOCUS FJ846634 2583 bp DNA linear VRL 12-APR-2009
DEFINITION HIV-1 isolate 96BW17 clone 3 from South Africa envelope
glycoprotein (env) gene, complete cds
ACCESSION FJ846634
VERSION FJ846634.1 GI:226429796
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2583)
Show all sequences for reference 1
AUTHORS Singh,A., Page,T., Moore,P.L., Allgaier,R.L., Hiramen,K.,
Coovadia,H.M., Walker,B.D., Morris,L. and Ndung'u,T.
TITLE Functional and genetic analysis of coreceptor usage by dualtropic
HIV-1 subtype C isolates.
JOURNAL Virology. 393(1); 56-67 (2009)
PUBMED 19695656
REFERENCE 2 (bases 1 to 2583)
Show all sequences for reference 2
AUTHORS Singh,A., Page,T., Allgaier,R.L., Hiramen,K., Coovadia,H.M.,
Moore,P., Morris,L. and Ndungu,T.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2009) Hasso Plattner Research Programme,
University of KwaZulu Natal - Nelson R. Mandela School of Medicine,
719 Umbilo Road, Durban, KwaZulu Natal 4013, South Africa
FEATURES Location/Qualifiers
source 1..2583
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="96BW17"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="3"
/country="South Africa: Durban"
/collection_date="1996"
/note="subtype: C"
gene 1..2583
/gene="env"
CDS 1..2583
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACO55147.1"
/db_xref="GI:226429797"
/translation="MRVMGILRNCQQWWIWGILGFWILMICSVVGNLWVTVYYGVPVW
REAKTTLFCASDAKAFDSEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTNTNYNNSTNVTSSTKGEMKNCSFNIT
TELRDKRKKESALFYRLDIVPLNGNNNGNNSYSEYRLINCNTSTITQACPKVSFDPIP
IHYCAPAGYAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIII
RSENLTDNAKIIIVQLNESIEIVCTRPNNNTRKSMRIGIGRGQTFYAMGRIIGDIRQA
HCNISGWNNTLQQVWKKLKEHFPNKTIKFAPSSGGDLEITTHSFNCGGEFFYCNTSIL
FNSTYNSTYNGTGSDSNSTITIPCRIKQIINMWQGVGRAMYAPPIEGNITCKSNITGL
LLTRDGGINKTMETFRPGGGNMRDNWRSELYKYKVVEIKPLGVAPTAAKRRVVEREKR
AVGLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLT
VWGIKQLQARVLALERYLKDQQLLGLWGCSGKLICTTSVPWNSTWSNKSLDDIWQNMT
WMEWDREINNYTNTIYRLLEESQNQQEKNEQELLALDSWANLWNWFNISNWLWYIKIF
IMIVGGLIGLRIVFAVLSVVNRVRQGYSPLSFQTLTPNPRGPDRLERIKEGGGEQDRG
RSIRLVSGFLALAWDDLRSLCIFLYHRLRDFILIAARTVNLLGQSSLRGLQRGWEALK
YLGSLGQYWGQELKKSAINLLDTIAIAVAEGTDRIIEVLQGAIRAILNIPTRIRQGLE
AALQ"
BASE COUNT 914 a 439 c 602 g 628 t
ORIGIN
1 atgagagtga tggggatatt gaggaattgt caacaatggt ggatatgggg catcttaggc
61 ttttggatat taatgatttg tagtgtggtg gggaacttgt gggtcacagt ctattatggg
121 gtacctgtgt ggagagaagc aaaaactact ctattctgtg catcagatgc taaagcattt
181 gatagcgaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatgg ttttggaaaa tgtaacagaa aactttaaca tgtggaaaaa tgatatggtg
301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag
361 ttgaccccac tctgtgtcac tttaaactgt acaaatacaa ctaatactaa ttacaataat
421 agcacaaatg ttaccagtag cacgaaagga gaaatgaaaa attgctcttt caatataacc
481 acagaattaa gagataaaag gaaaaaagaa agtgcacttt tttatagact tgatatagtg
541 ccacttaatg gaaataacaa tggtaataac agctatagtg agtatagatt aataaattgt
601 aatacctcaa ccataacaca agcctgtcca aaggtctctt ttgacccaat tcctatacat
661 tattgtgctc cagctggtta tgcgattcta aagtgtaata ataagacatt taatggaaca
721 ggaccatgca caaatgtcag cacagtacag tgtacacatg gaattaaacc agtggtgtca
781 actcagctac tgttaaatgg tagcctagca gaagaagaga taataattag atctgaaaat
841 ctgacagaca atgccaaaat aataatagta cagctaaatg aatctataga aattgtgtgt
901 acaagaccca acaataatac aagaaaaagt atgaggatag ggataggacg aggacaaaca
961 ttctatgcaa tgggacgaat aataggagat ataagacaag cacattgtaa cattagtggt
1021 tggaacaaca ctttacaaca ggtatggaaa aaattaaaag aacacttccc taataaaaca
1081 ataaaatttg caccatcctc aggaggggat ctagaaatta caacacatag ctttaattgt
1141 ggaggagagt ttttctattg caatacatca atactgttta atagtacata caatagtaca
1201 tacaatggta caggaagtga ttcaaactca accatcacga tcccatgcag aataaaacaa
1261 attataaaca tgtggcaggg ggtaggacga gcaatgtatg cccctcccat tgaagggaac
1321 ataacatgta aatcaaatat cacaggacta ctactgacac gtgatggagg aataaataag
1381 acaatggaga cattcagacc tggaggagga aatatgaggg acaattggag aagtgaatta
1441 tataaatata aagtagtaga aattaaacca ctaggagtag cacccactgc ggcaaaaagg
1501 agagtggtgg agagagaaaa aagagcagtg ggactgggag ctgtgttcct tggattcttg
1561 ggagcagcag gaagcactat gggcgcagcg tcaataacgc tgacggtaca ggccagacaa
1621 ttattatctg gtatagtgca acagcagaac aatctgctga gagctataga ggcgcaacaa
1681 catatgttgc aactcacagt ctggggcatt aagcagctcc aggcaagagt cctggctctg
1741 gaaagatacc taaaggatca acagctccta gggctttggg gctgctctgg aaaactcatc
1801 tgcaccactt ctgtgccttg gaatagtact tggagtaata aatctctaga tgatatttgg
1861 caaaacatga cctggatgga gtgggataga gaaattaaca attacacaaa cacaatatac
1921 aggttgcttg aagaatcaca gaaccagcag gagaaaaatg aacaagagtt attggcattg
1981 gacagttggg caaatctatg gaattggttt aacatatcaa attggttgtg gtatataaaa
2041 atattcataa tgatagtagg aggcttgata ggtttaagaa tagtttttgc tgtgctttct
2101 gtagtgaata gagttaggca gggatactca cctttgtcgt tccagaccct taccccaaac
2161 ccgaggggac ccgacaggct cgaaagaatc aaagaaggag gtggagagca agacagaggc
2221 agatccattc gattagtgag cggattctta gcacttgcct gggacgacct acggagcctg
2281 tgcatcttcc tttaccaccg cttgagagac ttcatcttga ttgcagcgag gactgtgaac
2341 ctactgggac agagcagtct caggggacta cagagggggt gggaagccct taaatatctg
2401 ggaagccttg ggcagtattg gggtcaggag ctaaaaaaga gtgctattaa tctgcttgat
2461 actatagcaa tagcagtagc tgaagggaca gataggatta tagaagtatt acaaggggct
2521 attagagcta tcctcaacat acctacaaga atcagacagg gcttggaagc agctttgcaa
2581 taa
//
last modified: Tue May 31 10:56 2022