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LOCUS	    FJ846634		    2583 bp    DNA     linear	VRL 12-APR-2009
DEFINITION  HIV-1 isolate 96BW17 clone 3 from South Africa envelope
	    glycoprotein (env) gene, complete cds
ACCESSION   FJ846634
VERSION     FJ846634.1 GI:226429796
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2583)
            Show all sequences for reference 1
  AUTHORS   Singh,A., Page,T., Moore,P.L., Allgaier,R.L., Hiramen,K.,
	    Coovadia,H.M., Walker,B.D., Morris,L. and Ndung'u,T.
  TITLE     Functional and genetic analysis of coreceptor usage by dualtropic
	    HIV-1 subtype C isolates.
  JOURNAL   Virology. 393(1); 56-67 (2009)
  PUBMED    19695656
REFERENCE   2 (bases 1 to 2583)
            Show all sequences for reference 2
  AUTHORS   Singh,A., Page,T., Allgaier,R.L., Hiramen,K., Coovadia,H.M.,
	    Moore,P., Morris,L. and Ndungu,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2009) Hasso Plattner Research Programme,
	    University of KwaZulu Natal - Nelson R. Mandela School of Medicine,
	    719 Umbilo Road, Durban, KwaZulu Natal 4013, South Africa
FEATURES             Location/Qualifiers
     source	     1..2583
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="96BW17"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="3"
		     /country="South Africa: Durban"
		     /collection_date="1996"
		     /note="subtype: C"
     gene	     1..2583
		     /gene="env"
     CDS	     1..2583
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACO55147.1"
		     /db_xref="GI:226429797"
		     /translation="MRVMGILRNCQQWWIWGILGFWILMICSVVGNLWVTVYYGVPVW
		     REAKTTLFCASDAKAFDSEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTNTNYNNSTNVTSSTKGEMKNCSFNIT
		     TELRDKRKKESALFYRLDIVPLNGNNNGNNSYSEYRLINCNTSTITQACPKVSFDPIP
		     IHYCAPAGYAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIII
		     RSENLTDNAKIIIVQLNESIEIVCTRPNNNTRKSMRIGIGRGQTFYAMGRIIGDIRQA
		     HCNISGWNNTLQQVWKKLKEHFPNKTIKFAPSSGGDLEITTHSFNCGGEFFYCNTSIL
		     FNSTYNSTYNGTGSDSNSTITIPCRIKQIINMWQGVGRAMYAPPIEGNITCKSNITGL
		     LLTRDGGINKTMETFRPGGGNMRDNWRSELYKYKVVEIKPLGVAPTAAKRRVVEREKR
		     AVGLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLT
		     VWGIKQLQARVLALERYLKDQQLLGLWGCSGKLICTTSVPWNSTWSNKSLDDIWQNMT
		     WMEWDREINNYTNTIYRLLEESQNQQEKNEQELLALDSWANLWNWFNISNWLWYIKIF
		     IMIVGGLIGLRIVFAVLSVVNRVRQGYSPLSFQTLTPNPRGPDRLERIKEGGGEQDRG
		     RSIRLVSGFLALAWDDLRSLCIFLYHRLRDFILIAARTVNLLGQSSLRGLQRGWEALK
		     YLGSLGQYWGQELKKSAINLLDTIAIAVAEGTDRIIEVLQGAIRAILNIPTRIRQGLE
		     AALQ"
BASE COUNT	914 a	 439 c	  602 g    628 t
ORIGIN
       1 atgagagtga tggggatatt gaggaattgt caacaatggt ggatatgggg catcttaggc 
      61 ttttggatat taatgatttg tagtgtggtg gggaacttgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggagagaagc aaaaactact ctattctgtg catcagatgc taaagcattt 
     181 gatagcgaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatgg ttttggaaaa tgtaacagaa aactttaaca tgtggaaaaa tgatatggtg 
     301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag 
     361 ttgaccccac tctgtgtcac tttaaactgt acaaatacaa ctaatactaa ttacaataat 
     421 agcacaaatg ttaccagtag cacgaaagga gaaatgaaaa attgctcttt caatataacc 
     481 acagaattaa gagataaaag gaaaaaagaa agtgcacttt tttatagact tgatatagtg 
     541 ccacttaatg gaaataacaa tggtaataac agctatagtg agtatagatt aataaattgt 
     601 aatacctcaa ccataacaca agcctgtcca aaggtctctt ttgacccaat tcctatacat 
     661 tattgtgctc cagctggtta tgcgattcta aagtgtaata ataagacatt taatggaaca 
     721 ggaccatgca caaatgtcag cacagtacag tgtacacatg gaattaaacc agtggtgtca 
     781 actcagctac tgttaaatgg tagcctagca gaagaagaga taataattag atctgaaaat 
     841 ctgacagaca atgccaaaat aataatagta cagctaaatg aatctataga aattgtgtgt 
     901 acaagaccca acaataatac aagaaaaagt atgaggatag ggataggacg aggacaaaca 
     961 ttctatgcaa tgggacgaat aataggagat ataagacaag cacattgtaa cattagtggt 
    1021 tggaacaaca ctttacaaca ggtatggaaa aaattaaaag aacacttccc taataaaaca 
    1081 ataaaatttg caccatcctc aggaggggat ctagaaatta caacacatag ctttaattgt 
    1141 ggaggagagt ttttctattg caatacatca atactgttta atagtacata caatagtaca 
    1201 tacaatggta caggaagtga ttcaaactca accatcacga tcccatgcag aataaaacaa 
    1261 attataaaca tgtggcaggg ggtaggacga gcaatgtatg cccctcccat tgaagggaac 
    1321 ataacatgta aatcaaatat cacaggacta ctactgacac gtgatggagg aataaataag 
    1381 acaatggaga cattcagacc tggaggagga aatatgaggg acaattggag aagtgaatta 
    1441 tataaatata aagtagtaga aattaaacca ctaggagtag cacccactgc ggcaaaaagg 
    1501 agagtggtgg agagagaaaa aagagcagtg ggactgggag ctgtgttcct tggattcttg 
    1561 ggagcagcag gaagcactat gggcgcagcg tcaataacgc tgacggtaca ggccagacaa 
    1621 ttattatctg gtatagtgca acagcagaac aatctgctga gagctataga ggcgcaacaa 
    1681 catatgttgc aactcacagt ctggggcatt aagcagctcc aggcaagagt cctggctctg 
    1741 gaaagatacc taaaggatca acagctccta gggctttggg gctgctctgg aaaactcatc 
    1801 tgcaccactt ctgtgccttg gaatagtact tggagtaata aatctctaga tgatatttgg 
    1861 caaaacatga cctggatgga gtgggataga gaaattaaca attacacaaa cacaatatac 
    1921 aggttgcttg aagaatcaca gaaccagcag gagaaaaatg aacaagagtt attggcattg 
    1981 gacagttggg caaatctatg gaattggttt aacatatcaa attggttgtg gtatataaaa 
    2041 atattcataa tgatagtagg aggcttgata ggtttaagaa tagtttttgc tgtgctttct 
    2101 gtagtgaata gagttaggca gggatactca cctttgtcgt tccagaccct taccccaaac 
    2161 ccgaggggac ccgacaggct cgaaagaatc aaagaaggag gtggagagca agacagaggc 
    2221 agatccattc gattagtgag cggattctta gcacttgcct gggacgacct acggagcctg 
    2281 tgcatcttcc tttaccaccg cttgagagac ttcatcttga ttgcagcgag gactgtgaac 
    2341 ctactgggac agagcagtct caggggacta cagagggggt gggaagccct taaatatctg 
    2401 ggaagccttg ggcagtattg gggtcaggag ctaaaaaaga gtgctattaa tctgcttgat 
    2461 actatagcaa tagcagtagc tgaagggaca gataggatta tagaagtatt acaaggggct 
    2521 attagagcta tcctcaacat acctacaaga atcagacagg gcttggaagc agctttgcaa 
    2581 taa
//
last modified: Tue May 31 10:56 2022


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