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LOCUS FJ846631 2550 bp DNA linear VRL 12-APR-2009
DEFINITION HIV-1 isolate 01ZADU36_5 clone 9 from South Africa envelope
glycoprotein (env) gene, complete cds
ACCESSION FJ846631
VERSION FJ846631.1 GI:226429790
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2550)
Show all sequences for reference 1
AUTHORS Singh,A., Page,T., Moore,P.L., Allgaier,R.L., Hiramen,K.,
Coovadia,H.M., Walker,B.D., Morris,L. and Ndung'u,T.
TITLE Functional and genetic analysis of coreceptor usage by dualtropic
HIV-1 subtype C isolates.
JOURNAL Virology. 393(1); 56-67 (2009)
PUBMED 19695656
REFERENCE 2 (bases 1 to 2550)
Show all sequences for reference 2
AUTHORS Singh,A., Page,T., Allgaier,R.L., Hiramen,K., Coovadia,H.M.,
Moore,P., Morris,L. and Ndungu,T.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2009) Hasso Plattner Research Programme,
University of KwaZulu Natal - Nelson R. Mandela School of Medicine,
719 Umbilo Road, Durban, KwaZulu Natal 4013, South Africa
FEATURES Location/Qualifiers
source 1..2550
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="01ZADU36_5"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="9"
/country="South Africa: Durban"
/collection_date="2001"
/note="subtype: C"
gene 1..2550
/gene="env"
CDS 1..2550
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACO55144.1"
/db_xref="GI:226429791"
/translation="MRVRGTQRNWPQWWIWGILGFWMVMICRGNLWVTVYYGVPVWKE
AKTTLFCASDAKTYEKEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNDMVDQMH
EDIISLWDQSLKPCVKLTPLCVTLNCTDANVTYNATYNQNNMTGEIKNCSFNTTTEIR
DKQQRAYALFHRPDIVPINESKKEYILIHCNTSTITQACPKVSFDPIPIHYCAPAGYA
ILKCNNKTFNGTGPCTNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIVRSENLTDNVK
TIIVHLKKSVAIVCTRPDNKINMKRIKIGPGRAFVATKGIRGDIRQAHCNISRPDWNE
TLEGVKKKLKEHYPNKTIEFKPHSGGDLEITTHSFNCRGEFFYCNTTKLFNISMTNDT
DKFITLPCRIKQIINMWQRVGRAMYAPPITGNITCNSSITGLLLTRDGGTTNGTENNN
TEIFRPAGGNMKDNWRSELYKYKVVEIKPLGIAPTGAKRRVVEREKRAVGIGAVLLGF
LGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQARV
LAIERYLKDQQLLGLWGCSGKLICTTNVPWNSSWSKKNLTDIWDNMTWMQWEREIDNY
TDTIYRLLEVSQTQQEQNEKDLLALDSWKNLWSWFSISKWLWYIKIFIMIVGGLIGLR
IIFAVLSIVRRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSVRLVNGFLA
LAWDDLRSLCLFSYRHLRDFILVTVRAAELLGRSSLRGLQRGWEALKYLGNLVLYWGL
ELKKSAISLLDTIAIAVAEGTDRIIELIQRICRAIRNIPRRIRQGFEASLL"
BASE COUNT 898 a 445 c 606 g 601 t
ORIGIN
1 atgagagtga gggggacaca gaggaattgg ccacaatggt ggatatgggg catcttaggc
61 ttttggatgg taatgatttg tagggggaac ttgtgggtca cagtctatta tggggtacct
121 gtgtggaaag aagcaaaaac tactctattc tgtgcatcag atgctaaaac atatgagaaa
181 gaagtgcata atgtttgggc tacacatgcc tgtgtaccca cagaccccaa cccacaagaa
241 atagttttgg gaaatgtaac agaaaatttt aatatgtgga aaaatgacat ggtggatcag
301 atgcatgagg atataatcag tttatgggat caaagcctaa agccatgtgt aaagttgacc
361 ccactatgtg tcactttaaa ttgtacagat gccaatgtta cctacaatgc tacctacaat
421 cagaataaca tgactggaga aataaaaaat tgctctttca acacaaccac agaaataaga
481 gataagcaac agagagcgta tgcacttttt catagacctg atatagtacc aattaatgag
541 agcaagaagg agtatatatt aatacattgc aatacctcaa ccataacaca ggcctgtcca
601 aaggtctctt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta
661 aagtgtaata ataagacatt caatggaaca gggccatgca ctaatgtcag ctcagtgcaa
721 tgtacacatg ggattaagcc agtggtatca actcaactac tgttaaatgg tagcctagca
781 gaagaggaga taatagttag atccgaaaac ctaacagaca atgtcaaaac aataatagta
841 caccttaaga aatctgtagc aattgtgtgt acacgacctg acaataagat aaacatgaaa
901 aggataaaga taggaccagg acgagcattc gttgcaacaa agggcataag aggagacata
961 agacaagcac attgtaacat tagtagacca gactggaatg aaactttaga aggggtaaag
1021 aaaaaattaa aagaacacta ccctaataaa acaatagaat ttaaaccaca ctcaggaggg
1081 gatctagaaa ttacaacaca tagttttaat tgtagagggg aatttttcta ttgcaataca
1141 acaaagctgt ttaatataag catgaccaat gacacagaca aattcatcac actcccatgt
1201 agaataaaac aaattataaa tatgtggcag agggtaggac gagcaatgta tgcccctccc
1261 attacaggaa acataacatg taactcaagt atcacaggac tactattgac acgtgatgga
1321 ggaacaacaa atggcacaga gaataataac acagagatat tcagacctgc aggaggaaat
1381 atgaaggata attggagaag tgaattatat aaatacaaag tggtagaaat taagccatta
1441 ggaatagcac ccactggagc aaaaaggaga gtggtggaga gagaaaaaag agcagtggga
1501 ataggagctg tgctccttgg gttcttggga gcagcaggaa gcactatggg cgcggcgtca
1561 atcacgctga cggtacaggc cagacaactg ttgtctggta tagtgcaaca gcaaagcaat
1621 ttgctgagag ctatagaggc gcaacagcat atgttgcaac tcacggtctg gggcattaag
1681 cagctccagg caagagtcct ggctatagaa agatacctaa aggatcaaca gctcctaggg
1741 ctttggggct gctctggaaa actcatctgc accactaatg tgccttggaa ctccagttgg
1801 agtaagaaaa atctaacaga catttgggat aacatgacct ggatgcagtg ggagagagaa
1861 attgataatt acacagacac aatatacagg ttgcttgaag tctcgcaaac ccagcaggag
1921 caaaatgaaa aagatttatt agcattggac agttggaaaa atctgtggag ttggtttagc
1981 atatcaaaat ggttgtggta tataaaaata ttcatcatga tagtaggagg cttgataggt
2041 ttgagaataa tttttgctgt gctttctata gtgagaagag ttaggcaggg atactcacct
2101 ttgtcgtttc agacccttac cccaaacccg aggggaccag acaggctcgg aggaatcgaa
2161 gaagaaggtg gagagcaaga cagagacaga tccgttcgat tagtgaacgg attcttagca
2221 cttgcctggg acgacctgcg gagcctgtgc ctcttcagct accgccactt gagagacttc
2281 atattggtga cagtgagagc agcggaactt ctgggacgca gcagtctcag gggactacag
2341 agggggtggg aagctcttaa gtatctggga aatcttgtgc tgtattgggg tctggaacta
2401 aaaaagagtg ctattagttt gcttgatacc atagcaatag cagtagctga aggaacagat
2461 aggattatag aattaataca aagaatttgt agagctattc gcaacatacc tagaagaata
2521 agacagggct ttgaagcatc tttgctataa
//
last modified: Tue May 31 10:56 2022