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LOCUS	    FJ846631		    2550 bp    DNA     linear	VRL 12-APR-2009
DEFINITION  HIV-1 isolate 01ZADU36_5 clone 9 from South Africa envelope
	    glycoprotein (env) gene, complete cds
ACCESSION   FJ846631
VERSION     FJ846631.1 GI:226429790
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2550)
            Show all sequences for reference 1
  AUTHORS   Singh,A., Page,T., Moore,P.L., Allgaier,R.L., Hiramen,K.,
	    Coovadia,H.M., Walker,B.D., Morris,L. and Ndung'u,T.
  TITLE     Functional and genetic analysis of coreceptor usage by dualtropic
	    HIV-1 subtype C isolates.
  JOURNAL   Virology. 393(1); 56-67 (2009)
  PUBMED    19695656
REFERENCE   2 (bases 1 to 2550)
            Show all sequences for reference 2
  AUTHORS   Singh,A., Page,T., Allgaier,R.L., Hiramen,K., Coovadia,H.M.,
	    Moore,P., Morris,L. and Ndungu,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2009) Hasso Plattner Research Programme,
	    University of KwaZulu Natal - Nelson R. Mandela School of Medicine,
	    719 Umbilo Road, Durban, KwaZulu Natal 4013, South Africa
FEATURES             Location/Qualifiers
     source	     1..2550
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="01ZADU36_5"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="9"
		     /country="South Africa: Durban"
		     /collection_date="2001"
		     /note="subtype: C"
     gene	     1..2550
		     /gene="env"
     CDS	     1..2550
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACO55144.1"
		     /db_xref="GI:226429791"
		     /translation="MRVRGTQRNWPQWWIWGILGFWMVMICRGNLWVTVYYGVPVWKE
		     AKTTLFCASDAKTYEKEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNDMVDQMH
		     EDIISLWDQSLKPCVKLTPLCVTLNCTDANVTYNATYNQNNMTGEIKNCSFNTTTEIR
		     DKQQRAYALFHRPDIVPINESKKEYILIHCNTSTITQACPKVSFDPIPIHYCAPAGYA
		     ILKCNNKTFNGTGPCTNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIVRSENLTDNVK
		     TIIVHLKKSVAIVCTRPDNKINMKRIKIGPGRAFVATKGIRGDIRQAHCNISRPDWNE
		     TLEGVKKKLKEHYPNKTIEFKPHSGGDLEITTHSFNCRGEFFYCNTTKLFNISMTNDT
		     DKFITLPCRIKQIINMWQRVGRAMYAPPITGNITCNSSITGLLLTRDGGTTNGTENNN
		     TEIFRPAGGNMKDNWRSELYKYKVVEIKPLGIAPTGAKRRVVEREKRAVGIGAVLLGF
		     LGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQARV
		     LAIERYLKDQQLLGLWGCSGKLICTTNVPWNSSWSKKNLTDIWDNMTWMQWEREIDNY
		     TDTIYRLLEVSQTQQEQNEKDLLALDSWKNLWSWFSISKWLWYIKIFIMIVGGLIGLR
		     IIFAVLSIVRRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSVRLVNGFLA
		     LAWDDLRSLCLFSYRHLRDFILVTVRAAELLGRSSLRGLQRGWEALKYLGNLVLYWGL
		     ELKKSAISLLDTIAIAVAEGTDRIIELIQRICRAIRNIPRRIRQGFEASLL"
BASE COUNT	898 a	 445 c	  606 g    601 t
ORIGIN
       1 atgagagtga gggggacaca gaggaattgg ccacaatggt ggatatgggg catcttaggc 
      61 ttttggatgg taatgatttg tagggggaac ttgtgggtca cagtctatta tggggtacct 
     121 gtgtggaaag aagcaaaaac tactctattc tgtgcatcag atgctaaaac atatgagaaa 
     181 gaagtgcata atgtttgggc tacacatgcc tgtgtaccca cagaccccaa cccacaagaa 
     241 atagttttgg gaaatgtaac agaaaatttt aatatgtgga aaaatgacat ggtggatcag 
     301 atgcatgagg atataatcag tttatgggat caaagcctaa agccatgtgt aaagttgacc 
     361 ccactatgtg tcactttaaa ttgtacagat gccaatgtta cctacaatgc tacctacaat 
     421 cagaataaca tgactggaga aataaaaaat tgctctttca acacaaccac agaaataaga 
     481 gataagcaac agagagcgta tgcacttttt catagacctg atatagtacc aattaatgag 
     541 agcaagaagg agtatatatt aatacattgc aatacctcaa ccataacaca ggcctgtcca 
     601 aaggtctctt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta 
     661 aagtgtaata ataagacatt caatggaaca gggccatgca ctaatgtcag ctcagtgcaa 
     721 tgtacacatg ggattaagcc agtggtatca actcaactac tgttaaatgg tagcctagca 
     781 gaagaggaga taatagttag atccgaaaac ctaacagaca atgtcaaaac aataatagta 
     841 caccttaaga aatctgtagc aattgtgtgt acacgacctg acaataagat aaacatgaaa 
     901 aggataaaga taggaccagg acgagcattc gttgcaacaa agggcataag aggagacata 
     961 agacaagcac attgtaacat tagtagacca gactggaatg aaactttaga aggggtaaag 
    1021 aaaaaattaa aagaacacta ccctaataaa acaatagaat ttaaaccaca ctcaggaggg 
    1081 gatctagaaa ttacaacaca tagttttaat tgtagagggg aatttttcta ttgcaataca 
    1141 acaaagctgt ttaatataag catgaccaat gacacagaca aattcatcac actcccatgt 
    1201 agaataaaac aaattataaa tatgtggcag agggtaggac gagcaatgta tgcccctccc 
    1261 attacaggaa acataacatg taactcaagt atcacaggac tactattgac acgtgatgga 
    1321 ggaacaacaa atggcacaga gaataataac acagagatat tcagacctgc aggaggaaat 
    1381 atgaaggata attggagaag tgaattatat aaatacaaag tggtagaaat taagccatta 
    1441 ggaatagcac ccactggagc aaaaaggaga gtggtggaga gagaaaaaag agcagtggga 
    1501 ataggagctg tgctccttgg gttcttggga gcagcaggaa gcactatggg cgcggcgtca 
    1561 atcacgctga cggtacaggc cagacaactg ttgtctggta tagtgcaaca gcaaagcaat 
    1621 ttgctgagag ctatagaggc gcaacagcat atgttgcaac tcacggtctg gggcattaag 
    1681 cagctccagg caagagtcct ggctatagaa agatacctaa aggatcaaca gctcctaggg 
    1741 ctttggggct gctctggaaa actcatctgc accactaatg tgccttggaa ctccagttgg 
    1801 agtaagaaaa atctaacaga catttgggat aacatgacct ggatgcagtg ggagagagaa 
    1861 attgataatt acacagacac aatatacagg ttgcttgaag tctcgcaaac ccagcaggag 
    1921 caaaatgaaa aagatttatt agcattggac agttggaaaa atctgtggag ttggtttagc 
    1981 atatcaaaat ggttgtggta tataaaaata ttcatcatga tagtaggagg cttgataggt 
    2041 ttgagaataa tttttgctgt gctttctata gtgagaagag ttaggcaggg atactcacct 
    2101 ttgtcgtttc agacccttac cccaaacccg aggggaccag acaggctcgg aggaatcgaa 
    2161 gaagaaggtg gagagcaaga cagagacaga tccgttcgat tagtgaacgg attcttagca 
    2221 cttgcctggg acgacctgcg gagcctgtgc ctcttcagct accgccactt gagagacttc 
    2281 atattggtga cagtgagagc agcggaactt ctgggacgca gcagtctcag gggactacag 
    2341 agggggtggg aagctcttaa gtatctggga aatcttgtgc tgtattgggg tctggaacta 
    2401 aaaaagagtg ctattagttt gcttgatacc atagcaatag cagtagctga aggaacagat 
    2461 aggattatag aattaataca aagaatttgt agagctattc gcaacatacc tagaagaata 
    2521 agacagggct ttgaagcatc tttgctataa 
//
last modified: Tue May 31 10:56 2022


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