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LOCUS FJ812613 2096 bp RNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A15_041306_PX_4246 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812613
VERSION FJ812613.1 GI:226347640
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2096)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2096)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2096
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="H2A15_041306_PX_4246"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="13-Apr-2006"
/note="group: A"
gene <1..>2096
/gene="pol"
CDS <1..>2096
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50231.1"
/db_xref="GI:226347641"
/translation="RGPNSAGADTNSTPSRSGSGPVGEVYAAGKETKGAERETIQGGD
RGPAAPQARRGADRRFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVAGIELGS
DYSPKIVGGIGGFMNTKEYKNVEIKVLNKKIRATIMTGDTPFNIFGRNILTALGMSLN
LPVAKVEPIKVTLKPGKDGPKLRQWPLTKEKIEALREICEKMEREGQLEEAPPTNPYN
TPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKRRRITVLDIGDAY
FSIPLHEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRK
ANQDVTIIQYVDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPFQWMG
YELWPTKWKLQKLQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTRHLCRLIRGKMTL
TEEVQWTELAEAELEENKIILSQEQEGSYYQEEKELEATVQRNQDNQWTYKIHQEDKT
LKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQWWDSYW
QVTWIPEWDFTSTPPLVRLAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGRD
KVKVLEQTTNQQAELEAFAMAVTDSGPKVNIIVDSQYVMGIVAGQPTESESKIVNQII
EEMIKKEAIYVAWVPA"
BASE COUNT 816 a 404 c 478 g 398 t
ORIGIN
1 cccgtggccc aaattccgca ggggctgaca ccaacagcac ccccagcaga tccggcagcg
61 gacctgttgg agaagtatat gcagcaggga aagagacaaa aggagcagag agagagacca
121 tacaaggagg tgacagagga cctgctgcac ctcaagcaag aagaggtgcc gacaggagat
181 ttgctgcgcc tcaattctct ctttggagac gaccagtagt cacagcacac atcgagggcc
241 agccagtaga agttctactg gacacagggg ctgatgactc aatagtagca gggatagaat
301 taggaagtga ttatagtcca aaaatagtag ggggaatagg gggattcatg aataccaaag
361 aatataaaaa tgtagaaata aaagtactaa ataagaagat aagagccacc ataatgacag
421 gcgacacccc attcaatatt tttggcagaa atatcctgac agccttaggc atgtcattaa
481 acctaccagt cgccaaggta gagccaataa aagtaacact gaagccaggg aaagatggac
541 caaaactgag acaatggccc ctaacaaaag aaaagataga agcactaaga gaaatctgtg
601 aaaaaatgga aagagaaggc cagctagaag aagcacctcc aactaatcct tacaataccc
661 ccacatttgc cattaaaaag aaagacaaaa acaaatggag aatgctaata gatttcagag
721 aactaaacaa ggtgacccaa gattttacag aaattcagtt aggaatccca cacccggcag
781 ggttagccaa gagaaggaga attactgtac tagatatagg agatgcttat ttttctatac
841 cattacatga agattttagg aagtacactg catttactat accatcagta aacaatgcag
901 aaccaggaaa aagatacata tacaaagtct taccacaggg gtggaaagga tcaccagcaa
961 tttttcaata cacaatgaga catgtcttag aaccatttag aaaagcaaac caggatgtca
1021 ctatcattca gtacgtggat gatatcctaa tagccagtga cagaacagac ttagaacatg
1081 atagggtagt tctacagcta aaggaacttc tgaatggcct agggttctct accccagatg
1141 agaagttcca aaaagatcct ccattccagt ggatgggcta tgaactatgg ccaactaaat
1201 ggaagttgca aaaattacag ttgccccaaa aagaggtatg gacagtcaat gacatccaaa
1261 agctagtagg tgtcttgaac tgggcagcgc aaatctaccc aggaataaag accagacacc
1321 tatgtagatt aattagagga aaaatgacac tcacagaaga agtacagtgg acagaattag
1381 cagaagcaga actagaagaa aacaaaatta tcctaagcca ggaacaagag ggaagctatt
1441 accaggaaga aaaagagttg gaagcaacag tccagagaaa tcaggacaat cagtggacat
1501 acaaaataca tcaggaagac aaaaccctaa aagtaggaaa atatgcaaag ataaaaaaca
1561 cccatactaa tggagtcaga ttactagcac aggtagttca gaaaatagga aaagaggcgc
1621 tagtcatttg gggacgaata ccaaagtttc acctaccagt ggaaagagac acctgggaac
1681 agtggtggga cagttattgg caagtaacat ggatcccaga atgggacttc acatctaccc
1741 caccactggt cagattagca tttaacttag taggagatcc tataccaggg gcagagacct
1801 tctacacaga tggatcctgc aatagacaat caaaagaagg gaaagcagga tatgtgacag
1861 acagggggag agacaaggta aaagtgttag agcaaactac caatcaacaa gcagaattag
1921 aggcctttgc aatggcagta acagactcag gtccaaaggt caatattata gtagactcac
1981 agtatgtaat gggaatagta gcaggccaac caacagaatc agagagtaag atagtaaatc
2041 aaatcataga agaaatgata aagaaagaag caatctatgt tgcatgggtt ccagcc
//
last modified: Tue May 31 10:56 2022