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LOCUS	    FJ812613		    2096 bp    RNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A15_041306_PX_4246 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812613
VERSION     FJ812613.1 GI:226347640
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2096)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2096)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2096
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="H2A15_041306_PX_4246"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="13-Apr-2006"
		     /note="group: A"
     gene	     <1..>2096
		     /gene="pol"
     CDS	     <1..>2096
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50231.1"
		     /db_xref="GI:226347641"
		     /translation="RGPNSAGADTNSTPSRSGSGPVGEVYAAGKETKGAERETIQGGD
		     RGPAAPQARRGADRRFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVAGIELGS
		     DYSPKIVGGIGGFMNTKEYKNVEIKVLNKKIRATIMTGDTPFNIFGRNILTALGMSLN
		     LPVAKVEPIKVTLKPGKDGPKLRQWPLTKEKIEALREICEKMEREGQLEEAPPTNPYN
		     TPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKRRRITVLDIGDAY
		     FSIPLHEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRK
		     ANQDVTIIQYVDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPFQWMG
		     YELWPTKWKLQKLQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTRHLCRLIRGKMTL
		     TEEVQWTELAEAELEENKIILSQEQEGSYYQEEKELEATVQRNQDNQWTYKIHQEDKT
		     LKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQWWDSYW
		     QVTWIPEWDFTSTPPLVRLAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGRD
		     KVKVLEQTTNQQAELEAFAMAVTDSGPKVNIIVDSQYVMGIVAGQPTESESKIVNQII
		     EEMIKKEAIYVAWVPA"
BASE COUNT	816 a	 404 c	  478 g    398 t
ORIGIN
       1 cccgtggccc aaattccgca ggggctgaca ccaacagcac ccccagcaga tccggcagcg 
      61 gacctgttgg agaagtatat gcagcaggga aagagacaaa aggagcagag agagagacca 
     121 tacaaggagg tgacagagga cctgctgcac ctcaagcaag aagaggtgcc gacaggagat 
     181 ttgctgcgcc tcaattctct ctttggagac gaccagtagt cacagcacac atcgagggcc 
     241 agccagtaga agttctactg gacacagggg ctgatgactc aatagtagca gggatagaat 
     301 taggaagtga ttatagtcca aaaatagtag ggggaatagg gggattcatg aataccaaag 
     361 aatataaaaa tgtagaaata aaagtactaa ataagaagat aagagccacc ataatgacag 
     421 gcgacacccc attcaatatt tttggcagaa atatcctgac agccttaggc atgtcattaa 
     481 acctaccagt cgccaaggta gagccaataa aagtaacact gaagccaggg aaagatggac 
     541 caaaactgag acaatggccc ctaacaaaag aaaagataga agcactaaga gaaatctgtg 
     601 aaaaaatgga aagagaaggc cagctagaag aagcacctcc aactaatcct tacaataccc 
     661 ccacatttgc cattaaaaag aaagacaaaa acaaatggag aatgctaata gatttcagag 
     721 aactaaacaa ggtgacccaa gattttacag aaattcagtt aggaatccca cacccggcag 
     781 ggttagccaa gagaaggaga attactgtac tagatatagg agatgcttat ttttctatac 
     841 cattacatga agattttagg aagtacactg catttactat accatcagta aacaatgcag 
     901 aaccaggaaa aagatacata tacaaagtct taccacaggg gtggaaagga tcaccagcaa 
     961 tttttcaata cacaatgaga catgtcttag aaccatttag aaaagcaaac caggatgtca 
    1021 ctatcattca gtacgtggat gatatcctaa tagccagtga cagaacagac ttagaacatg 
    1081 atagggtagt tctacagcta aaggaacttc tgaatggcct agggttctct accccagatg 
    1141 agaagttcca aaaagatcct ccattccagt ggatgggcta tgaactatgg ccaactaaat 
    1201 ggaagttgca aaaattacag ttgccccaaa aagaggtatg gacagtcaat gacatccaaa 
    1261 agctagtagg tgtcttgaac tgggcagcgc aaatctaccc aggaataaag accagacacc 
    1321 tatgtagatt aattagagga aaaatgacac tcacagaaga agtacagtgg acagaattag 
    1381 cagaagcaga actagaagaa aacaaaatta tcctaagcca ggaacaagag ggaagctatt 
    1441 accaggaaga aaaagagttg gaagcaacag tccagagaaa tcaggacaat cagtggacat 
    1501 acaaaataca tcaggaagac aaaaccctaa aagtaggaaa atatgcaaag ataaaaaaca 
    1561 cccatactaa tggagtcaga ttactagcac aggtagttca gaaaatagga aaagaggcgc 
    1621 tagtcatttg gggacgaata ccaaagtttc acctaccagt ggaaagagac acctgggaac 
    1681 agtggtggga cagttattgg caagtaacat ggatcccaga atgggacttc acatctaccc 
    1741 caccactggt cagattagca tttaacttag taggagatcc tataccaggg gcagagacct 
    1801 tctacacaga tggatcctgc aatagacaat caaaagaagg gaaagcagga tatgtgacag 
    1861 acagggggag agacaaggta aaagtgttag agcaaactac caatcaacaa gcagaattag 
    1921 aggcctttgc aatggcagta acagactcag gtccaaaggt caatattata gtagactcac 
    1981 agtatgtaat gggaatagta gcaggccaac caacagaatc agagagtaag atagtaaatc 
    2041 aaatcataga agaaatgata aagaaagaag caatctatgt tgcatgggtt ccagcc
//
last modified: Tue May 31 10:56 2022


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