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LOCUS	    FJ812612		    2108 bp    DNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A14_122905_WBC_27 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812612
VERSION     FJ812612.1 GI:226347638
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2108)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2108)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2108
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="H2A14_122905_WBC_27"
		     /isolation_source="PBMC"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="29-Dec-2005"
		     /note="group: A"
     gene	     <1..>2108
		     /gene="pol"
     CDS	     <1..>2108
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50230.1"
		     /db_xref="GI:226347639"
		     /translation="RGPSPTGADTNSTSNGSSNGPIGEVYAARKKAEGTEAETIQRSD
		     RGLDKPQAGRDIMQRDNRGFAAPQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGI
		     ELGSNYSPKIVGGIGGFINTKEYRNVEIEVLNKKVRATIMTGDTPINIFGRNILTALG
		     MSLNLPIAKVEPIKITLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPT
		     NPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDV
		     GDAYFSIPLHEDFRQYTAFTLPSINNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILE
		     PFRKANPDVILIQYMDDILVASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPY
		     QWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRG
		     KMTLTEEVQWTDLAEAELEENKIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQ
		     GDKILKVGKYAKVKNTHTNGVRLLAHVVQKIGKEALVIWGRIPKFHLPVERDTWEQWW
		     DNYWQVTWIPDWDFVSTPPLVRLVFNLVKDPLPGVETFYTDGSCNRQSKEGKAGYITD
		     RGRDKVKVLKQTTNQQAELEAFAMAITDSGPKANIIVDSQYVMGIIAGQPTESESRIV
		     NQIIEEMIKKEAIYVAWVPA"
BASE COUNT	824 a	 402 c	  469 g    413 t
ORIGIN
       1 cccgtggccc aagtcccaca ggggctgaca ccaacagcac ctccaatgga tccagcaacg 
      61 gacctattgg agaagtatat gcagcaagga agaaagcaga gggaacagag gcagagacca 
     121 tacaaagaag tgacagagga cttgataaac ctcaggcagg aagagacatc atgcaaagag 
     181 acaacagagg atttgctgca cctcaattct ctctttggaa acgaccagta gtcacagcat 
     241 acattgaggg tcagccagta gaagttttac tagacacagg ggctgacgat tcaatagtag 
     301 caggaataga gttagggagc aattatagtc caaaaatagt agggggaata gggggattca 
     361 taaataccaa agaatataga aatgtagaaa tagaagtatt aaataagaaa gtaagagcca 
     421 ccataatgac aggtgatacc ccaatcaata tttttggcag aaacattctg acagccttag 
     481 gcatgtcatt aaacttacca attgccaagg tagaaccaat aaaaataaca ttgaagccag 
     541 gaaaggatgg accaaaattg agacagtggc ccttaacaaa agaaaaaata gaggcactaa 
     601 aagaaatctg tgagaaaatg gaaaaagagg gccagctgga ggaagcacct ccaactaatc 
     661 cttataacac ccccacattt gcaatcaaga aaaaggacaa gaataaatgg agaatgctaa 
     721 tagattttag agagctaaat aaggtaactc aagatttcac agaaattcag ttaggaattc 
     781 cacacccagc aggattagcc aaaaagaggc gaatcactgt actagatgta ggggatgcct 
     841 acttctccat acccctacat gaagatttta gacagtatac tgcatttacc ctaccatcaa 
     901 taaacaatgc tgaaccagga aagagataca tatacaaagt cttaccacag ggatggaagg 
     961 gatcaccagc aatttttcag tatacaatga ggcagatctt agaaccattc agaaaagcaa 
    1021 acccagatgt cattctcatt cagtacatgg atgatatttt agtagccagt gacaggacag 
    1081 atttagaaca tgacagagta gtcctgcagc taaaggaact tctgaatggc ctaggatttt 
    1141 ccaccccaga tgagaagttc caaaaagacc ctccatacca atggatgggc tatgaactat 
    1201 ggccaactaa atggaagcta caaaagatac aactgcctca aaaggaagta tggacagtca 
    1261 atgacatcca aaagctggtg ggtgtcctga attgggcagc acaaatttac ccagggataa 
    1321 agaccaaaca cttatgcagg ttaattagag gaaaaatgac actcacagaa gaagtacagt 
    1381 ggacagactt agcagaagca gagctagaag aaaacaaaat tatcttaagc caggaacaag 
    1441 agggatgcta ttaccaggaa gaaaaagagt tagaggcaac ggtccaaaag gaccaagata 
    1501 atcagtggac atataagata catcaggggg acaaaattct aaaagtagga aaatatgcaa 
    1561 aggtaaaaaa tacccacacc aacggagtca gactcttagc acatgtggtt cagaaaatag 
    1621 gaaaagaagc actagtcatt tggggacgaa taccaaagtt tcacctgcca gtggaaagag 
    1681 atacctggga acagtggtgg gataactact ggcaagtaac atggatccca gactgggact 
    1741 ttgtatctac cccaccactg gttagattag tatttaacct agtaaaagat cccttaccag 
    1801 gtgtagagac cttctacaca gatggatcct gcaacaggca atcaaaagaa gggaaagcag 
    1861 gatacataac agatagagga agagacaagg taaaagtatt aaagcaaacc accaatcagc 
    1921 aagcagaatt agaagccttt gcaatggcaa taactgactc aggtccaaag gccaacatta 
    1981 tagtagactc acaatatgta atgggaataa tagcaggcca accaacagag tcagaaagta 
    2041 ggatagtaaa tcaaatcata gaagaaatga tcaaaaagga ggcgatctat gttgcatggg 
    2101 ttccagcc
//
last modified: Tue May 31 10:56 2022


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