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LOCUS FJ812612 2108 bp DNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A14_122905_WBC_27 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812612
VERSION FJ812612.1 GI:226347638
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2108)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2108)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2108
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="H2A14_122905_WBC_27"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="29-Dec-2005"
/note="group: A"
gene <1..>2108
/gene="pol"
CDS <1..>2108
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50230.1"
/db_xref="GI:226347639"
/translation="RGPSPTGADTNSTSNGSSNGPIGEVYAARKKAEGTEAETIQRSD
RGLDKPQAGRDIMQRDNRGFAAPQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGI
ELGSNYSPKIVGGIGGFINTKEYRNVEIEVLNKKVRATIMTGDTPINIFGRNILTALG
MSLNLPIAKVEPIKITLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPT
NPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDV
GDAYFSIPLHEDFRQYTAFTLPSINNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILE
PFRKANPDVILIQYMDDILVASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPY
QWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRG
KMTLTEEVQWTDLAEAELEENKIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQ
GDKILKVGKYAKVKNTHTNGVRLLAHVVQKIGKEALVIWGRIPKFHLPVERDTWEQWW
DNYWQVTWIPDWDFVSTPPLVRLVFNLVKDPLPGVETFYTDGSCNRQSKEGKAGYITD
RGRDKVKVLKQTTNQQAELEAFAMAITDSGPKANIIVDSQYVMGIIAGQPTESESRIV
NQIIEEMIKKEAIYVAWVPA"
BASE COUNT 824 a 402 c 469 g 413 t
ORIGIN
1 cccgtggccc aagtcccaca ggggctgaca ccaacagcac ctccaatgga tccagcaacg
61 gacctattgg agaagtatat gcagcaagga agaaagcaga gggaacagag gcagagacca
121 tacaaagaag tgacagagga cttgataaac ctcaggcagg aagagacatc atgcaaagag
181 acaacagagg atttgctgca cctcaattct ctctttggaa acgaccagta gtcacagcat
241 acattgaggg tcagccagta gaagttttac tagacacagg ggctgacgat tcaatagtag
301 caggaataga gttagggagc aattatagtc caaaaatagt agggggaata gggggattca
361 taaataccaa agaatataga aatgtagaaa tagaagtatt aaataagaaa gtaagagcca
421 ccataatgac aggtgatacc ccaatcaata tttttggcag aaacattctg acagccttag
481 gcatgtcatt aaacttacca attgccaagg tagaaccaat aaaaataaca ttgaagccag
541 gaaaggatgg accaaaattg agacagtggc ccttaacaaa agaaaaaata gaggcactaa
601 aagaaatctg tgagaaaatg gaaaaagagg gccagctgga ggaagcacct ccaactaatc
661 cttataacac ccccacattt gcaatcaaga aaaaggacaa gaataaatgg agaatgctaa
721 tagattttag agagctaaat aaggtaactc aagatttcac agaaattcag ttaggaattc
781 cacacccagc aggattagcc aaaaagaggc gaatcactgt actagatgta ggggatgcct
841 acttctccat acccctacat gaagatttta gacagtatac tgcatttacc ctaccatcaa
901 taaacaatgc tgaaccagga aagagataca tatacaaagt cttaccacag ggatggaagg
961 gatcaccagc aatttttcag tatacaatga ggcagatctt agaaccattc agaaaagcaa
1021 acccagatgt cattctcatt cagtacatgg atgatatttt agtagccagt gacaggacag
1081 atttagaaca tgacagagta gtcctgcagc taaaggaact tctgaatggc ctaggatttt
1141 ccaccccaga tgagaagttc caaaaagacc ctccatacca atggatgggc tatgaactat
1201 ggccaactaa atggaagcta caaaagatac aactgcctca aaaggaagta tggacagtca
1261 atgacatcca aaagctggtg ggtgtcctga attgggcagc acaaatttac ccagggataa
1321 agaccaaaca cttatgcagg ttaattagag gaaaaatgac actcacagaa gaagtacagt
1381 ggacagactt agcagaagca gagctagaag aaaacaaaat tatcttaagc caggaacaag
1441 agggatgcta ttaccaggaa gaaaaagagt tagaggcaac ggtccaaaag gaccaagata
1501 atcagtggac atataagata catcaggggg acaaaattct aaaagtagga aaatatgcaa
1561 aggtaaaaaa tacccacacc aacggagtca gactcttagc acatgtggtt cagaaaatag
1621 gaaaagaagc actagtcatt tggggacgaa taccaaagtt tcacctgcca gtggaaagag
1681 atacctggga acagtggtgg gataactact ggcaagtaac atggatccca gactgggact
1741 ttgtatctac cccaccactg gttagattag tatttaacct agtaaaagat cccttaccag
1801 gtgtagagac cttctacaca gatggatcct gcaacaggca atcaaaagaa gggaaagcag
1861 gatacataac agatagagga agagacaagg taaaagtatt aaagcaaacc accaatcagc
1921 aagcagaatt agaagccttt gcaatggcaa taactgactc aggtccaaag gccaacatta
1981 tagtagactc acaatatgta atgggaataa tagcaggcca accaacagag tcagaaagta
2041 ggatagtaaa tcaaatcata gaagaaatga tcaaaaagga ggcgatctat gttgcatggg
2101 ttccagcc
//
last modified: Tue May 31 10:56 2022