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LOCUS	    FJ812570		    2111 bp    DNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A05_041906_WBC_4162 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812570
VERSION     FJ812570.1 GI:226347554
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2111)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2111)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2111
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="H2A05_041906_WBC_4162"
		     /isolation_source="PBMC"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="19-Apr-2006"
		     /note="group: A"
     gene	     <1..>2111
		     /gene="pol"
     CDS	     <1..>2111
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50188.1"
		     /db_xref="GI:226347555"
		     /translation="HGPSPAGADANGTPSRSGSGPVGEIYAAREKAEGAEGEAIQGGD
		     RGLTAPRAGRGAIQRGANGGLAAPQFSLWKRPVVTAYIEEQPVEVLLDTGADDSIVAG
		     IELGSDYTPKIVGGIGGFINTKEYKNVEIKVLNKKVRATIMTGDTPINIFGRNILTAL
		     GMSLNLPIAKVEPIKIMLKPGKDGPRLRQWPLSKEKIEALKEICEKMEKEGQLEEAPP
		     TNPYNTPTFAIRKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKRKRITVLD
		     IGDAYFSIPLDEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPTIFQHTMRHVL
		     EPFRKANPDVTIIQYMDDILIASGRTNLEHDQVVLQLKELLNGLGFSTPDEKFQKDPP
		     YQWMGYELWPTKWKLQKLQLPQKEIWTVNDIQKLVGVLNWAAQIYPGIKTRHLCKLIR
		     GRMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATIQKNEHNQWTYKIH
		     QGDNLLKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQW
		     WDNYWQVTWIPDWDFISTPPLVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYIT
		     DRGRDKVRVLEQTTNQQAELEAFAMAITDSGPKANIIVDSQYVMGIVAGQPTESESKI
		     VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT	818 a	 406 c	  482 g    405 t
ORIGIN
       1 cccatggccc aagtcccgca ggggctgatg ccaacggcac ccccagcaga tccggcagcg 
      61 gacctgttgg agaaatatat gcagcaaggg agaaagctga aggagcagag ggcgaggcca 
     121 tacaaggagg tgacagagga cttactgcac ctcgagcagg gagaggagcc atacagagag 
     181 gtgccaacgg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcacag 
     241 catacattga ggagcagcca gtagaagtct tactggacac aggagctgat gactcaatag 
     301 tagcaggaat agagttaggg agtgattata ccccaaaaat agtaggggga atagggggat 
     361 tcataaatac taaggaatat aaaaatgtag aaataaaagt actaaataag aaagtaagag 
     421 ccaccataat gacaggtgac accccaatca atatttttgg cagaaacatt ctgacagcct 
     481 taggcatgtc attaaaccta ccaattgcca aagtagagcc aataaaaata atgctgaagc 
     541 caggaaaaga tgggccaagg ctgaggcaat ggcccttgtc aaaagaaaaa atagaggcac 
     601 taaaagagat ctgtgaaaaa atggaaaaag aaggccaatt agaggaagca cccccaacta 
     661 atccttataa tacccccaca tttgccatta ggaaaaagga caagaacaaa tggagaatgc 
     721 taatagattt tagagaacta aacaaagtga ctcaagactt tacagaaatt cagttaggaa 
     781 tcccacaccc ggcagggtta gccaagagaa aaagaattac agtactagat ataggagatg 
     841 cttatttctc cataccatta gatgaggatt tcagaaagta tactgcattt actataccat 
     901 cagtaaacaa tgcagaacca ggaaagagat acatatataa agtcttacca caaggatgga 
     961 agggatcacc aacaattttt cagcacacaa tgaggcatgt cttagaacca ttcagaaaag 
    1021 caaacccaga tgtcactatc attcagtaca tggatgatat cttgatagct agtggcagaa 
    1081 caaacctaga acatgaccag gtagtcctac agctcaaaga actactaaat ggcctaggat 
    1141 tctctacccc agatgagaag ttccaaaaag accctccata tcaatggatg ggctatgagc 
    1201 tatggccaac taaatggaag ttgcagaaat tgcaactgcc ccaaaaagaa atatggacag 
    1261 tcaatgatat ccaaaagcta gtgggtgtct tgaactgggc agcacagatc tacccaggga 
    1321 taaagactag acatttatgt aagttaatca gaggaagaat gacactcaca gaggaagtac 
    1381 agtggacaga attagcagaa gcagaactag aagagaacaa gattatcctg agtcaggaac 
    1441 aagagggatg ctattatcaa gaagaaaaag aattagaggc aacaatccaa aagaatgaac 
    1501 acaatcagtg gacatataaa atacaccaag gggataatct tctgaaagta ggaaaatatg 
    1561 caaaggtaaa aaatacccat accaatggag tcagattatt agcacaggta gttcaaaaaa 
    1621 taggaaaaga agcactagtc atttggggac gaataccaaa atttcaccta ccagtagaaa 
    1681 gagatacctg ggaacagtgg tgggacaatt actggcaagt gacatggatc ccagactggg 
    1741 acttcatatc taccccacca ctggtcaggt tagcatttaa cctggtgaaa gatcccatac 
    1801 caggcgcaga gaccttctac acagatggat cctgcaatag acagtcaaaa gaaggaaaag 
    1861 caggatacat aacagataga ggaagggaca aggtgagagt attagagcaa actaccaatc 
    1921 agcaagcaga attagaagcc tttgcaatgg caataacaga ctcaggccca aaagccaaca 
    1981 tcatagtaga ctcacagtat gtaatgggga tagtagcagg ccaaccaaca gagtcagaga 
    2041 gtaaaatagt aaatcaaatc atagaggaga tgataaaaaa ggaagcaatc tatgttgcat 
    2101 gggtcccagc c
//
last modified: Tue May 31 10:56 2022


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