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LOCUS FJ812570 2111 bp DNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A05_041906_WBC_4162 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812570
VERSION FJ812570.1 GI:226347554
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2111)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2111)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2111
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="H2A05_041906_WBC_4162"
/isolation_source="PBMC"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="19-Apr-2006"
/note="group: A"
gene <1..>2111
/gene="pol"
CDS <1..>2111
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50188.1"
/db_xref="GI:226347555"
/translation="HGPSPAGADANGTPSRSGSGPVGEIYAAREKAEGAEGEAIQGGD
RGLTAPRAGRGAIQRGANGGLAAPQFSLWKRPVVTAYIEEQPVEVLLDTGADDSIVAG
IELGSDYTPKIVGGIGGFINTKEYKNVEIKVLNKKVRATIMTGDTPINIFGRNILTAL
GMSLNLPIAKVEPIKIMLKPGKDGPRLRQWPLSKEKIEALKEICEKMEKEGQLEEAPP
TNPYNTPTFAIRKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKRKRITVLD
IGDAYFSIPLDEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPTIFQHTMRHVL
EPFRKANPDVTIIQYMDDILIASGRTNLEHDQVVLQLKELLNGLGFSTPDEKFQKDPP
YQWMGYELWPTKWKLQKLQLPQKEIWTVNDIQKLVGVLNWAAQIYPGIKTRHLCKLIR
GRMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATIQKNEHNQWTYKIH
QGDNLLKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQW
WDNYWQVTWIPDWDFISTPPLVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYIT
DRGRDKVRVLEQTTNQQAELEAFAMAITDSGPKANIIVDSQYVMGIVAGQPTESESKI
VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT 818 a 406 c 482 g 405 t
ORIGIN
1 cccatggccc aagtcccgca ggggctgatg ccaacggcac ccccagcaga tccggcagcg
61 gacctgttgg agaaatatat gcagcaaggg agaaagctga aggagcagag ggcgaggcca
121 tacaaggagg tgacagagga cttactgcac ctcgagcagg gagaggagcc atacagagag
181 gtgccaacgg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcacag
241 catacattga ggagcagcca gtagaagtct tactggacac aggagctgat gactcaatag
301 tagcaggaat agagttaggg agtgattata ccccaaaaat agtaggggga atagggggat
361 tcataaatac taaggaatat aaaaatgtag aaataaaagt actaaataag aaagtaagag
421 ccaccataat gacaggtgac accccaatca atatttttgg cagaaacatt ctgacagcct
481 taggcatgtc attaaaccta ccaattgcca aagtagagcc aataaaaata atgctgaagc
541 caggaaaaga tgggccaagg ctgaggcaat ggcccttgtc aaaagaaaaa atagaggcac
601 taaaagagat ctgtgaaaaa atggaaaaag aaggccaatt agaggaagca cccccaacta
661 atccttataa tacccccaca tttgccatta ggaaaaagga caagaacaaa tggagaatgc
721 taatagattt tagagaacta aacaaagtga ctcaagactt tacagaaatt cagttaggaa
781 tcccacaccc ggcagggtta gccaagagaa aaagaattac agtactagat ataggagatg
841 cttatttctc cataccatta gatgaggatt tcagaaagta tactgcattt actataccat
901 cagtaaacaa tgcagaacca ggaaagagat acatatataa agtcttacca caaggatgga
961 agggatcacc aacaattttt cagcacacaa tgaggcatgt cttagaacca ttcagaaaag
1021 caaacccaga tgtcactatc attcagtaca tggatgatat cttgatagct agtggcagaa
1081 caaacctaga acatgaccag gtagtcctac agctcaaaga actactaaat ggcctaggat
1141 tctctacccc agatgagaag ttccaaaaag accctccata tcaatggatg ggctatgagc
1201 tatggccaac taaatggaag ttgcagaaat tgcaactgcc ccaaaaagaa atatggacag
1261 tcaatgatat ccaaaagcta gtgggtgtct tgaactgggc agcacagatc tacccaggga
1321 taaagactag acatttatgt aagttaatca gaggaagaat gacactcaca gaggaagtac
1381 agtggacaga attagcagaa gcagaactag aagagaacaa gattatcctg agtcaggaac
1441 aagagggatg ctattatcaa gaagaaaaag aattagaggc aacaatccaa aagaatgaac
1501 acaatcagtg gacatataaa atacaccaag gggataatct tctgaaagta ggaaaatatg
1561 caaaggtaaa aaatacccat accaatggag tcagattatt agcacaggta gttcaaaaaa
1621 taggaaaaga agcactagtc atttggggac gaataccaaa atttcaccta ccagtagaaa
1681 gagatacctg ggaacagtgg tgggacaatt actggcaagt gacatggatc ccagactggg
1741 acttcatatc taccccacca ctggtcaggt tagcatttaa cctggtgaaa gatcccatac
1801 caggcgcaga gaccttctac acagatggat cctgcaatag acagtcaaaa gaaggaaaag
1861 caggatacat aacagataga ggaagggaca aggtgagagt attagagcaa actaccaatc
1921 agcaagcaga attagaagcc tttgcaatgg caataacaga ctcaggccca aaagccaaca
1981 tcatagtaga ctcacagtat gtaatgggga tagtagcagg ccaaccaaca gagtcagaga
2041 gtaaaatagt aaatcaaatc atagaggaga tgataaaaaa ggaagcaatc tatgttgcat
2101 gggtcccagc c
//
last modified: Tue May 31 10:56 2022