View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS FJ812540 2111 bp RNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A02_102505_PX_74 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812540
VERSION FJ812540.1 GI:226347494
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2111)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2111)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2111
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="H2A02_102505_PX_74"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="25-Oct-2005"
/note="group: A"
gene <1..>2111
/gene="pol"
CDS <1..>2111
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50158.1"
/db_xref="GI:226347495"
/translation="CGPSPAGADTNSTPNRSGSGPIGKIYAAREETKRAERETIQGGD
RGLDKPQAGGDTMQGATMRGLAAPQFSLWKRPVVLAYIEGQPIEVLLDTGADDSIVAG
IELGSNYSPKIVGGIGGFINVKEYKNAEIKVLGKKIRATIMIGDTPIDIFGRNILTAL
GMSLNFPVAKIEPIKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPP
TNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVID
IGDAYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPMGWKGSPAIFQYTIRQVL
EPFRRTNPDVILIQYVDDILIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPP
YQWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIR
GKTTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVQKDEDNQWTYKIH
QEEKILKVGKYAKIKNTHTNGVRLLAQVIQKIGKEALVIWGRIPKFHLPVERDVWEQW
WDNYWQVTWIPEWDFVSTPPLVRLVFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYIT
DRGRDKVKVLEQTTNQQAELEAFAMAVTDSGPKANIIVDSQYVMGIVAGQPTESESRI
VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT 810 a 402 c 494 g 405 t
ORIGIN
1 cctgtggccc aagtcccgca ggggctgaca ccaacagcac ccccaataga tccggcagcg
61 gacctattgg aaagatatat gcagcaaggg aagaaacaaa gagagcagag agagagacca
121 tacaaggagg tgacagagga cttgataaac ctcaggcagg gggagacacc atgcagggag
181 ccaccatgcg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcctag
241 catacattga gggtcagcca atagaagttt tactagacac aggggctgac gactcaatag
301 tagcaggaat agagttaggg agcaattata gtccaaaaat agtaggggga ataggaggat
361 tcataaatgt caaggagtat aaaaatgcag aaataaaagt gttaggtaag aagataagag
421 ccaccataat gataggtgac accccaatcg acatttttgg cagaaacatt ttgacagcct
481 taggcatgtc attaaatttc ccagtcgcca agatagaacc aataaaagta acattgaagc
541 caggaaaaga tggaccaaaa ctgaggcaat ggcccttaac aaaagaaaaa atagaggcac
601 taaaagagat ctgtgagaaa atggaaaaag agggccagct agaggaagca cccccaacta
661 atccttataa tacccccaca tttgcaatca agaagaagga caaaaacaaa tggagaatgc
721 taatagattt cagagaacta aacaaggtga ctcaagattt cacagaaatt cagttaggaa
781 ttccacaccc agcaggatta gccaagaaga gaagaattac tgtaatagat ataggggatg
841 cttacttttc tataccactg catgaagatt tcagacagta tactgcattt actttgccat
901 cagtgaacaa tgctgaacca ggaaagagat atatatacaa ggtcttgccc atgggatgga
961 agggatcacc agcaatcttt cagtacacaa taaggcaagt cttagaacca ttcaggagga
1021 caaatccgga tgtcattctc attcagtatg tagatgatat cttgatagct agtgacagga
1081 cagatttaga acatgacaaa gtagtcctgc agctaaagga actcctaaat ggtctgggat
1141 tttccacccc agacgagaag ttccaaaaag accctccata ccaatggatg ggctatgaac
1201 tgtggccaac taaatggaag ctgcagaaaa tacaactgcc acaaaaggaa gtgtggacag
1261 tcaatgacat ccaaaagctg gtgggtgtcc taaattgggc agcacaaatc tatccaggga
1321 taaagaccaa gcacttatgc aggctaatca gaggaaaaac aacactcaca gaggaagtac
1381 agtggacaga gttagcagaa gcagagctag aagaaaacaa aattatctta agccaggaac
1441 aagagggatg ttattaccaa gaggaaaagg agctagaggc aacagtccaa aaggatgaag
1501 acaatcagtg gacatataaa atacaccaag aggagaaaat tctaaaagta ggaaaatatg
1561 caaagataaa aaatacccac accaatggag tcaggctatt agcacaggta attcaaaaaa
1621 taggaaaaga ggcactagtc atttggggaa gaataccaaa atttcaccta ccagtagaaa
1681 gagatgtctg ggaacagtgg tgggacaact attggcaagt gacatggatc ccagaatggg
1741 acttcgtgtc taccccacca ctggtcaggt tagtgtttaa cctagtgaaa gatcccatac
1801 caggcgcaga aaccttctac acagatggat cctgcaatag gcagtcaaaa gaaggaaaag
1861 caggatacat aacagataga gggagagaca aggtgaaggt attagagcag accaccaatc
1921 agcaagcaga attagaagcc tttgcaatgg cagtgacaga ctcaggccca aaagccaata
1981 ttatagtaga ctcacaatat gtaatgggaa tagtagcagg ccaaccaaca gaatcagaga
2041 gtagaatagt aaatcaaatc atagaagaaa tgatcaaaaa ggaggcaatc tatgttgcat
2101 gggttccagc c
//
last modified: Tue May 31 10:56 2022