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LOCUS	    FJ812540		    2111 bp    RNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A02_102505_PX_74 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812540
VERSION     FJ812540.1 GI:226347494
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2111)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2111)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2111
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="H2A02_102505_PX_74"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="25-Oct-2005"
		     /note="group: A"
     gene	     <1..>2111
		     /gene="pol"
     CDS	     <1..>2111
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50158.1"
		     /db_xref="GI:226347495"
		     /translation="CGPSPAGADTNSTPNRSGSGPIGKIYAAREETKRAERETIQGGD
		     RGLDKPQAGGDTMQGATMRGLAAPQFSLWKRPVVLAYIEGQPIEVLLDTGADDSIVAG
		     IELGSNYSPKIVGGIGGFINVKEYKNAEIKVLGKKIRATIMIGDTPIDIFGRNILTAL
		     GMSLNFPVAKIEPIKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPP
		     TNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVID
		     IGDAYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPMGWKGSPAIFQYTIRQVL
		     EPFRRTNPDVILIQYVDDILIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPP
		     YQWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIR
		     GKTTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVQKDEDNQWTYKIH
		     QEEKILKVGKYAKIKNTHTNGVRLLAQVIQKIGKEALVIWGRIPKFHLPVERDVWEQW
		     WDNYWQVTWIPEWDFVSTPPLVRLVFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYIT
		     DRGRDKVKVLEQTTNQQAELEAFAMAVTDSGPKANIIVDSQYVMGIVAGQPTESESRI
		     VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT	810 a	 402 c	  494 g    405 t
ORIGIN
       1 cctgtggccc aagtcccgca ggggctgaca ccaacagcac ccccaataga tccggcagcg 
      61 gacctattgg aaagatatat gcagcaaggg aagaaacaaa gagagcagag agagagacca 
     121 tacaaggagg tgacagagga cttgataaac ctcaggcagg gggagacacc atgcagggag 
     181 ccaccatgcg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcctag 
     241 catacattga gggtcagcca atagaagttt tactagacac aggggctgac gactcaatag 
     301 tagcaggaat agagttaggg agcaattata gtccaaaaat agtaggggga ataggaggat 
     361 tcataaatgt caaggagtat aaaaatgcag aaataaaagt gttaggtaag aagataagag 
     421 ccaccataat gataggtgac accccaatcg acatttttgg cagaaacatt ttgacagcct 
     481 taggcatgtc attaaatttc ccagtcgcca agatagaacc aataaaagta acattgaagc 
     541 caggaaaaga tggaccaaaa ctgaggcaat ggcccttaac aaaagaaaaa atagaggcac 
     601 taaaagagat ctgtgagaaa atggaaaaag agggccagct agaggaagca cccccaacta 
     661 atccttataa tacccccaca tttgcaatca agaagaagga caaaaacaaa tggagaatgc 
     721 taatagattt cagagaacta aacaaggtga ctcaagattt cacagaaatt cagttaggaa 
     781 ttccacaccc agcaggatta gccaagaaga gaagaattac tgtaatagat ataggggatg 
     841 cttacttttc tataccactg catgaagatt tcagacagta tactgcattt actttgccat 
     901 cagtgaacaa tgctgaacca ggaaagagat atatatacaa ggtcttgccc atgggatgga 
     961 agggatcacc agcaatcttt cagtacacaa taaggcaagt cttagaacca ttcaggagga 
    1021 caaatccgga tgtcattctc attcagtatg tagatgatat cttgatagct agtgacagga 
    1081 cagatttaga acatgacaaa gtagtcctgc agctaaagga actcctaaat ggtctgggat 
    1141 tttccacccc agacgagaag ttccaaaaag accctccata ccaatggatg ggctatgaac 
    1201 tgtggccaac taaatggaag ctgcagaaaa tacaactgcc acaaaaggaa gtgtggacag 
    1261 tcaatgacat ccaaaagctg gtgggtgtcc taaattgggc agcacaaatc tatccaggga 
    1321 taaagaccaa gcacttatgc aggctaatca gaggaaaaac aacactcaca gaggaagtac 
    1381 agtggacaga gttagcagaa gcagagctag aagaaaacaa aattatctta agccaggaac 
    1441 aagagggatg ttattaccaa gaggaaaagg agctagaggc aacagtccaa aaggatgaag 
    1501 acaatcagtg gacatataaa atacaccaag aggagaaaat tctaaaagta ggaaaatatg 
    1561 caaagataaa aaatacccac accaatggag tcaggctatt agcacaggta attcaaaaaa 
    1621 taggaaaaga ggcactagtc atttggggaa gaataccaaa atttcaccta ccagtagaaa 
    1681 gagatgtctg ggaacagtgg tgggacaact attggcaagt gacatggatc ccagaatggg 
    1741 acttcgtgtc taccccacca ctggtcaggt tagtgtttaa cctagtgaaa gatcccatac 
    1801 caggcgcaga aaccttctac acagatggat cctgcaatag gcagtcaaaa gaaggaaaag 
    1861 caggatacat aacagataga gggagagaca aggtgaaggt attagagcag accaccaatc 
    1921 agcaagcaga attagaagcc tttgcaatgg cagtgacaga ctcaggccca aaagccaata 
    1981 ttatagtaga ctcacaatat gtaatgggaa tagtagcagg ccaaccaaca gaatcagaga 
    2041 gtagaatagt aaatcaaatc atagaagaaa tgatcaaaaa ggaggcaatc tatgttgcat 
    2101 gggttccagc c
//
last modified: Tue May 31 10:56 2022


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