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LOCUS FJ800441 1058 bp DNA linear VRL 01-APR-2009
DEFINITION HIV-1 isolate HN-TR71 from Honduras pol protein (pol) gene, partial
cds
ACCESSION FJ800441
VERSION FJ800441.1 GI:225729377
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1058)
Show all sequences for reference 1
AUTHORS Murillo,W., de Rivera,I.L., Parham,L., Jovel,E., Palou,E.,
Karlsson,A.C. and Albert,J.
TITLE Prevalence of drug resistance and importance of viral load
measurements in Honduran HIV-infected patients failing
antiretroviral treatment.
JOURNAL HIV. Med.. 11(2); 95-103 (2010)
PUBMED 19686436
REFERENCE 2 (bases 1 to 1058)
Show all sequences for reference 2
AUTHORS Murillo,W., Lorenzana de Rivera,I., Parham,L., Jovel,E., Palou,E.,
Karlsson,A.C. and Albert,J.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2009) Departamento de Microbiologia, Universidad
Nacional Autonoma de Honduras, Boul Suyapa, Ciudad Universitaria,
Edificio CB, 4to Piso, Tegucigalpa, Francisco Morazan, Honduras
FEATURES Location/Qualifiers
source 1..1058
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="HN-TR71"
/isolation_source="heterosexual human"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Honduras"
/collection_date="02-Aug-2006"
gene <1..>1058
/gene="pol"
CDS <1..>1058
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO24632.1"
/db_xref="GI:225729378"
/translation="PQVTLWQRPLVSIKIGGQIKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYEQIPVEIYGHRAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
MVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIMLPEKDSWTV"
BASE COUNT 406 a 171 c 223 g 248 t 10 other
ORIGIN
1 cctcaggtca ctctttggca acgacccctc gtctcaataa agataggggg gcaaataaag
61 gaagctctat tggatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgag
181 cagatacccg tagaaatcta cgggcataga gctataggta cagtattaat aggacctaca
241 cctgtcaata taattggaag aaatttattg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaargtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgagaatc catacaatac tccagtattt
481 gccataaaga aaaargacag tactaaatgg agaaaattag tagatttcag agagcttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaamaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tccattagat
661 aaagacttca ggaagtatac tgcattyacc ataccyagta yaaacaatga gacaccaggr
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagccyttt agaaaacaaa atccagayat ggtkatctat
841 caatacatgg atgatttgta tgtaggatct gacctagaaa tagggcaaca tagagcaaaa
901 atagaagaac tgagacaaca tctgttgagg tggggattta ccacaccaga caagaaacat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagtg
1021 cagcctataa tgctgccaga aaaagacagc tggactgt
//
last modified: Tue May 31 10:56 2022