View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS FJ800401 1050 bp DNA linear VRL 01-APR-2009
DEFINITION HIV-1 isolate HN-TR29 from Honduras pol protein (pol) gene, partial
cds
ACCESSION FJ800401
VERSION FJ800401.1 GI:225729297
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1050)
Show all sequences for reference 1
AUTHORS Murillo,W., de Rivera,I.L., Parham,L., Jovel,E., Palou,E.,
Karlsson,A.C. and Albert,J.
TITLE Prevalence of drug resistance and importance of viral load
measurements in Honduran HIV-infected patients failing
antiretroviral treatment.
JOURNAL HIV. Med.. 11(2); 95-103 (2010)
PUBMED 19686436
REFERENCE 2 (bases 1 to 1050)
Show all sequences for reference 2
AUTHORS Murillo,W., Lorenzana de Rivera,I., Parham,L., Jovel,E., Palou,E.,
Karlsson,A.C. and Albert,J.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2009) Departamento de Microbiologia, Universidad
Nacional Autonoma de Honduras, Boul Suyapa, Ciudad Universitaria,
Edificio CB, 4to Piso, Tegucigalpa, Francisco Morazan, Honduras
FEATURES Location/Qualifiers
source 1..1050
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="HN-TR29"
/isolation_source="MTCT"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Honduras"
/collection_date="08-Jul-2005"
gene <1..>1050
/gene="pol"
CDS <1..>1050
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="2"
/transl_table="1"
/product="pol protein"
/protein_id="ACO24592.1"
/db_xref="GI:225729298"
/translation="TLWQRPXVTIKIGGQLKEALLDTGADBTVLEEMNLPGXWKPXXI
GGIGGFIKVRQYDQIHXEICGHKAVGTVLXGPTPVNIIGRNLLTQIGCTLNFPISPIE
TVPVKLKPGMDGPKVKQWPLTEEKIKALXEICTELEKDGKISKIGPENPYNTPVFAIK
KKDSTKWRKIVDFRELNKRTQDFWEVQLGIPHPAGIKKNKSVTVLDVGDAYFSXPLDK
EFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPEIVI
YQYVDDLYVGSDLEIGQHRAKIEELRQHLWRWGFYTPXNKHQKEPPFRWMGYELHPDK
WTVQPIMLPEKDSWTG"
BASE COUNT 402 a 179 c 218 g 237 t 14 other
ORIGIN
1 cactctttgg caacgacccy tcgtcacaat aaagataggg gggcagttaa aggaagctct
61 attagacaca ggagcagatr atacagtgtt agaagaaatg aatttgccag gaaratggaa
121 accamaaatr atagggggaa ttggcggttt tatcaaagta agacagtatg atcagataca
181 crtagaaatc tgcggacata aagctgtagg tacagtatta rtaggaccca cycctgtcaa
241 cataattgga agaaatttgt tgactcagat tggctgcact ttaaattttc ccattagtcc
301 tattgaaact gtaccagtaa aactaaagcc aggaatggat ggcccaaaag tcaaacaatg
361 gccattgaca gaagaaaaaa taaaagcatt artagaaatt tgtacagaat tggaraagga
421 cggaaaratt tcaaaaattg ggcctgaaaa tccatacaat actccagtat ttgccataaa
481 gaaaaaagac agtactaaat ggagaaaaat agtagatttc agagaactta ataagagaac
541 tcaagacttc tgggaagttc aattaggaat accacatccc gcaggaataa aaaagaacaa
601 atcagtaaca gtactggatg tgggtgatgc atatttctca rttcccttag ataaagaatt
661 caggaagtac actgcattca ccatacctag tatcaacaat gagacaccag ggattagata
721 tcagtacaat gtgcttccac aaggatggaa aggatcacca gcaatattcc aaagtagcat
781 gacaaaaatc ttagagcctt ttagaaaaga aaatccagag atagtcatct atcaatacgt
841 rgatgatttg tatgtaggat ctgacttaga aatagggcag catagagcaa aaatagagga
901 actgagacaa catctgtgga ggtggggatt ttacacacca gasaacaaac atcagaaaga
961 acctccattt cgttggatgg gttatgaact acatcccgac aaatggacag tacagcctat
1021 aatgctgcca gaaaaggaca gctggactgg
//
last modified: Tue May 31 10:56 2022