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LOCUS	    FJ800401		    1050 bp    DNA     linear	VRL 01-APR-2009
DEFINITION  HIV-1 isolate HN-TR29 from Honduras pol protein (pol) gene, partial
	    cds
ACCESSION   FJ800401
VERSION     FJ800401.1 GI:225729297
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1050)
            Show all sequences for reference 1
  AUTHORS   Murillo,W., de Rivera,I.L., Parham,L., Jovel,E., Palou,E.,
	    Karlsson,A.C. and Albert,J.
  TITLE     Prevalence of drug resistance and importance of viral load
	    measurements in Honduran HIV-infected patients failing
	    antiretroviral treatment.
  JOURNAL   HIV. Med.. 11(2); 95-103 (2010)
  PUBMED    19686436
REFERENCE   2 (bases 1 to 1050)
            Show all sequences for reference 2
  AUTHORS   Murillo,W., Lorenzana de Rivera,I., Parham,L., Jovel,E., Palou,E.,
	    Karlsson,A.C. and Albert,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2009) Departamento de Microbiologia, Universidad
	    Nacional Autonoma de Honduras, Boul Suyapa, Ciudad Universitaria,
	    Edificio CB, 4to Piso, Tegucigalpa, Francisco Morazan, Honduras
FEATURES             Location/Qualifiers
     source	     1..1050
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="HN-TR29"
		     /isolation_source="MTCT"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Honduras"
		     /collection_date="08-Jul-2005"
     gene	     <1..>1050
		     /gene="pol"
     CDS	     <1..>1050
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="2"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO24592.1"
		     /db_xref="GI:225729298"
		     /translation="TLWQRPXVTIKIGGQLKEALLDTGADBTVLEEMNLPGXWKPXXI
		     GGIGGFIKVRQYDQIHXEICGHKAVGTVLXGPTPVNIIGRNLLTQIGCTLNFPISPIE
		     TVPVKLKPGMDGPKVKQWPLTEEKIKALXEICTELEKDGKISKIGPENPYNTPVFAIK
		     KKDSTKWRKIVDFRELNKRTQDFWEVQLGIPHPAGIKKNKSVTVLDVGDAYFSXPLDK
		     EFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPEIVI
		     YQYVDDLYVGSDLEIGQHRAKIEELRQHLWRWGFYTPXNKHQKEPPFRWMGYELHPDK
		     WTVQPIMLPEKDSWTG"
BASE COUNT	402 a	 179 c	  218 g    237 t     14 other
ORIGIN
       1 cactctttgg caacgacccy tcgtcacaat aaagataggg gggcagttaa aggaagctct 
      61 attagacaca ggagcagatr atacagtgtt agaagaaatg aatttgccag gaaratggaa 
     121 accamaaatr atagggggaa ttggcggttt tatcaaagta agacagtatg atcagataca 
     181 crtagaaatc tgcggacata aagctgtagg tacagtatta rtaggaccca cycctgtcaa 
     241 cataattgga agaaatttgt tgactcagat tggctgcact ttaaattttc ccattagtcc 
     301 tattgaaact gtaccagtaa aactaaagcc aggaatggat ggcccaaaag tcaaacaatg 
     361 gccattgaca gaagaaaaaa taaaagcatt artagaaatt tgtacagaat tggaraagga 
     421 cggaaaratt tcaaaaattg ggcctgaaaa tccatacaat actccagtat ttgccataaa 
     481 gaaaaaagac agtactaaat ggagaaaaat agtagatttc agagaactta ataagagaac 
     541 tcaagacttc tgggaagttc aattaggaat accacatccc gcaggaataa aaaagaacaa 
     601 atcagtaaca gtactggatg tgggtgatgc atatttctca rttcccttag ataaagaatt 
     661 caggaagtac actgcattca ccatacctag tatcaacaat gagacaccag ggattagata 
     721 tcagtacaat gtgcttccac aaggatggaa aggatcacca gcaatattcc aaagtagcat 
     781 gacaaaaatc ttagagcctt ttagaaaaga aaatccagag atagtcatct atcaatacgt 
     841 rgatgatttg tatgtaggat ctgacttaga aatagggcag catagagcaa aaatagagga 
     901 actgagacaa catctgtgga ggtggggatt ttacacacca gasaacaaac atcagaaaga 
     961 acctccattt cgttggatgg gttatgaact acatcccgac aaatggacag tacagcctat 
    1021 aatgctgcca gaaaaggaca gctggactgg 
//
last modified: Tue May 31 10:56 2022


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