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LOCUS FJ798380 2971 bp DNA linear VRL 21-APR-2009
DEFINITION HIV-1 isolate 1077_27 from USA envelope glycoprotein (env), rev
protein (rev), and tat protein (tat) genes, partial cds; and nef
protein (nef) gene, complete cds
ACCESSION FJ798380
VERSION FJ798380.1 GI:226914893
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2971)
Show all sequences for reference 1
AUTHORS Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
Swanstrom,R.I.
TITLE Major coexisting human immunodeficiency virus type 1 env gene
subpopulations in the peripheral blood are produced by cells with
similar turnover rates and show little evidence of genetic
compartmentalization
JOURNAL J. Virol. 83 (9), 4068-4080 (2009)
PUBMED 19211740
REFERENCE 2 (bases 1 to 2971)
Show all sequences for reference 2
AUTHORS Ince,W.L.
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2009) Lineberger Cancer Center, University of
North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## DBID 3572016710 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2971
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1077_27"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene <1..2172
/gene="env"
CDS <1..2172
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACO90763.1"
/db_xref="GI:226914896"
/translation="LNCTDKFNLTGVTTETPKMENDTIGQIKNCSFNITTDIRDKVKK
EHALFYSIDIVPIKNENGSYRLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCN
DKKFKGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSQNFSNNAKTIIVQ
LKEPVIINCTRPNNNTRKSITIGPGKALYTTEIIGNIRQAHCNISEEQWGKTLHQIAT
KLREQFKNATIITFNQSSGGDPEIVTHSFNCGGEFFYCSTSLLFNSTWNFTTKENITR
LNGTITLPCKIKQIVNMWQEVGKAMYAPPIRGQINCSSNITGLLLTRDGGNGSRDTEI
FRPGGGDMRDNWRSELYKYKIIKIEPLGVAPTKAKRRVVQREKRGVTLGAMFLGFLGA
AGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARVLAV
ERYLRDQQLLGIWGCSGKLICATAVPWNASWSNKTHDEIWNNMTWMQWEREIDNYTGY
IYTLLEKSQNQQEKNEQELLELDKWANLWNWFNISNWLWYIKIFIMIVGGLIGLRIVF
TVLSIVNRVRQGYSPLSFQTRLPTPRGPDRPEGIEEEGGERDRDRSGRLADGFLALFW
NDLRSLCLFSYHNLRDLLLIVARTVEILGRRGWEALKYWWNLLQYWSQELKNSAINLL
NATAVAVAEGTDRIIEVVQRGFRAILNIPRRIRQGLELALL"
gene <1756..2030
/gene="rev"
CDS <1756..2030
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ACO90762.1"
/db_xref="GI:226914895"
/translation="PPPNPEGTRQARRNRRRRWRARQRQIRSISGWILSALLERSAEP
VPLQLPQLERLTLDCSEDCGNSGTQGVGGPQILVESPTVLESGTKE"
gene <1756..1846
/gene="tat"
CDS <1756..1846
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ACO90761.1"
/db_xref="GI:226914894"
/translation="PASQPRGDPTGQKESKKKVESETETDPVD"
gene 2174..2791
/gene="nef"
CDS 2174..2791
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ACO90764.1"
/db_xref="GI:226914897"
/translation="MGGKWSKLKAGWTRVREKMEQAEPAAEGVGAASRDLEKHGALTS
SNTAANNAACAWLEAHEDEEVGFPVRPQVPLRPMTFKAALDLSHFLKEMGGLDGLIYS
QRRQDILDLWVYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEQVEKANEGEN
NSLLHPMSQHGMDDPEKEVLVWKFDSLLAFQHIAREKHPEYYKDC"
BASE COUNT 1008 a 544 c 719 g 700 t
ORIGIN
1 ttaaattgca ctgataagtt taatttgaca ggagttacta ctgagacccc taagatggag
61 aatgatacta taggacaaat aaaaaactgc tctttcaata tcaccacaga cataagagat
121 aaggtgaaaa aagaacatgc acttttttat agcatagata tagtgccaat aaaaaatgag
181 aatggtagct ataggttgac aagttgtaac acctcagtca ttacacaggc ctgtccaaag
241 gtatcctttg agccaattcc catacattat tgtgccccgg ctggttttgc gattctaaag
301 tgtaatgata aaaaattcaa gggaacagga ctatgtaaaa atgtcagcac agtacaatgt
361 acacatggaa ttagaccagt agtgtcaact caactgctgt taaatggcag tctagcagaa
421 gaagagatag taattagatc tcaaaatttc tcgaacaatg ctaaaaccat aatagtacag
481 ctgaaagaac ctgtaataat taattgtaca agacccaaca acaatacaag aaaaagtata
541 actataggac cagggaaagc attatataca acagaaataa taggaaatat aagacaagca
601 cattgtaaca ttagtgaaga acaatggggt aaaactttac atcagatagc tacaaaatta
661 agagaacaat ttaagaatgc aacaataata acctttaatc aatcctcagg aggggaccca
721 gaaattgtaa cacacagttt taattgtgga ggagaatttt tctactgtag tacatcacta
781 ctgtttaata gtacttggaa ttttactaca aaggaaaata ttacaagatt aaatggtact
841 atcacactcc catgtaaaat aaaacaaatt gtaaacatgt ggcaggaagt aggaaaagca
901 atgtatgccc ctcccattag aggacaaatt aactgttcat caaatattac agggctgtta
961 ttaacaagag atggtggtaa cggaagcagg gacaccgaga tcttcagacc tggaggggga
1021 gatatgaggg acaattggag aagtgaatta tataaatata aaataataaa aattgaacca
1081 ttaggagtag ctcccaccaa ggcaaagaga agagtggtgc aaagagaaaa aagaggagtg
1141 acgctaggag ctatgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcg
1201 tcaataacgc tgacggtaca ggccagacaa ttactgtctg gtatagtgca acagcagagc
1261 aatctgctga gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc
1321 aagcagctcc aggcaagagt cctagctgtg gaaagatacc taagggatca acagctccta
1381 gggatttggg gttgctctgg aaaactcatt tgcgccactg ctgtgccttg gaatgctagt
1441 tggagtaata aaactcatga tgagatttgg aataacatga cctggatgca atgggaaaga
1501 gaaattgaca attacacagg ctacatatac accttacttg aaaaatcgca aaaccaacaa
1561 gaaaagaatg aacaagaatt attagaatta gataaatggg caaatttgtg gaattggttc
1621 aacatatcaa attggctgtg gtatataaaa atattcataa tgatagtagg aggcttgata
1681 ggtttaagaa tagtttttac tgtactttct atagtaaata gagttaggca gggatattca
1741 ccattatcat ttcagacccg cctcccaacc ccgaggggac ccgacaggcc agaaggaatc
1801 gaagaagaag gtggagagcg agacagagac agatccggtc gattagcgga tggattctta
1861 gcgctcttct ggaacgatct gcggagcctg tgcctcttca gctaccacaa cttgagagac
1921 ttactcttga ttgtagcgag gactgtggaa attctgggac gcagggggtg ggaggccctc
1981 aaatattggt ggaatctcct acagtattgg agtcaggaac taaagaatag tgctattaac
2041 ttgcttaatg ccacagctgt agcagtagct gaggggacag ataggattat agaagtagta
2101 caaagaggct ttagagctat tctcaacata cctagaagaa taagacaggg cttggaactt
2161 gctttgcttt aaaatgggtg gaaagtggtc aaaacttaag gcgggatgga ctagagtaag
2221 ggaaaaaatg gaacaagctg aaccagcagc agagggagtg ggagcagcat ctcgagacct
2281 ggaaaaacat ggggcgctca caagtagcaa tacagcagct aataatgctg cttgtgcctg
2341 gctagaagca catgaggatg aggaggtggg ttttccagtc agacctcagg tacctttaag
2401 accaatgact ttcaaggcag ctctcgatct tagccacttt ttaaaagaaa tggggggact
2461 ggatgggcta atttactccc aaagaagaca agatatcctt gatttgtggg tctaccacac
2521 acaaggatac ttccctgatt ggcagaatta cacaccaggg ccagggacca gatttccact
2581 gacatttgga tggtgcttca agctagtacc agttgatcca gagcaggtag aaaaggccaa
2641 tgaaggagag aacaacagct tgttacaccc tatgagccaa catgggatgg atgacccgga
2701 gaaagaagtg ttagtgtgga agtttgacag ccttctagca tttcagcaca ttgcccgaga
2761 gaagcatccg gagtactaca aagactgctg acatcgagct ttctacaagg gactttccgc
2821 tggggacttt ccaggggagg cgcggcctgg gcgggactgg gagtggcgag ccctcagatg
2881 ctgcatataa gcagccgctt ttgcctgtac tgggtctctc tggttagacc agatctgagc
2941 ctgggagctc tctggcctac tagggaaccc a
//
last modified: Tue May 31 10:56 2022