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LOCUS	    FJ798380		    2971 bp    DNA     linear	VRL 21-APR-2009
DEFINITION  HIV-1 isolate 1077_27 from USA envelope glycoprotein (env), rev
	    protein (rev), and tat protein (tat) genes, partial cds; and nef
	    protein (nef) gene, complete cds
ACCESSION   FJ798380
VERSION     FJ798380.1 GI:226914893
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2971)
            Show all sequences for reference 1
  AUTHORS   Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
	    Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
	    Swanstrom,R.I.
  TITLE     Major coexisting human immunodeficiency virus type 1 env gene
	    subpopulations in the peripheral blood are produced by cells with
	    similar turnover rates and show little evidence of genetic
	    compartmentalization
  JOURNAL   J. Virol. 83 (9), 4068-4080 (2009)
  PUBMED    19211740
REFERENCE   2 (bases 1 to 2971)
            Show all sequences for reference 2
  AUTHORS   Ince,W.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2009) Lineberger Cancer Center, University of
	    North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## DBID 3572016710 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2971
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1077_27"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: B"
     gene	     <1..2172
		     /gene="env"
     CDS	     <1..2172
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACO90763.1"
		     /db_xref="GI:226914896"
		     /translation="LNCTDKFNLTGVTTETPKMENDTIGQIKNCSFNITTDIRDKVKK
		     EHALFYSIDIVPIKNENGSYRLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCN
		     DKKFKGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSQNFSNNAKTIIVQ
		     LKEPVIINCTRPNNNTRKSITIGPGKALYTTEIIGNIRQAHCNISEEQWGKTLHQIAT
		     KLREQFKNATIITFNQSSGGDPEIVTHSFNCGGEFFYCSTSLLFNSTWNFTTKENITR
		     LNGTITLPCKIKQIVNMWQEVGKAMYAPPIRGQINCSSNITGLLLTRDGGNGSRDTEI
		     FRPGGGDMRDNWRSELYKYKIIKIEPLGVAPTKAKRRVVQREKRGVTLGAMFLGFLGA
		     AGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARVLAV
		     ERYLRDQQLLGIWGCSGKLICATAVPWNASWSNKTHDEIWNNMTWMQWEREIDNYTGY
		     IYTLLEKSQNQQEKNEQELLELDKWANLWNWFNISNWLWYIKIFIMIVGGLIGLRIVF
		     TVLSIVNRVRQGYSPLSFQTRLPTPRGPDRPEGIEEEGGERDRDRSGRLADGFLALFW
		     NDLRSLCLFSYHNLRDLLLIVARTVEILGRRGWEALKYWWNLLQYWSQELKNSAINLL
		     NATAVAVAEGTDRIIEVVQRGFRAILNIPRRIRQGLELALL"
     gene	     <1756..2030
		     /gene="rev"
     CDS	     <1756..2030
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACO90762.1"
		     /db_xref="GI:226914895"
		     /translation="PPPNPEGTRQARRNRRRRWRARQRQIRSISGWILSALLERSAEP
		     VPLQLPQLERLTLDCSEDCGNSGTQGVGGPQILVESPTVLESGTKE"
     gene	     <1756..1846
		     /gene="tat"
     CDS	     <1756..1846
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACO90761.1"
		     /db_xref="GI:226914894"
		     /translation="PASQPRGDPTGQKESKKKVESETETDPVD"
     gene	     2174..2791
		     /gene="nef"
     CDS	     2174..2791
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACO90764.1"
		     /db_xref="GI:226914897"
		     /translation="MGGKWSKLKAGWTRVREKMEQAEPAAEGVGAASRDLEKHGALTS
		     SNTAANNAACAWLEAHEDEEVGFPVRPQVPLRPMTFKAALDLSHFLKEMGGLDGLIYS
		     QRRQDILDLWVYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEQVEKANEGEN
		     NSLLHPMSQHGMDDPEKEVLVWKFDSLLAFQHIAREKHPEYYKDC"
BASE COUNT     1008 a	 544 c	  719 g    700 t
ORIGIN
       1 ttaaattgca ctgataagtt taatttgaca ggagttacta ctgagacccc taagatggag 
      61 aatgatacta taggacaaat aaaaaactgc tctttcaata tcaccacaga cataagagat 
     121 aaggtgaaaa aagaacatgc acttttttat agcatagata tagtgccaat aaaaaatgag 
     181 aatggtagct ataggttgac aagttgtaac acctcagtca ttacacaggc ctgtccaaag 
     241 gtatcctttg agccaattcc catacattat tgtgccccgg ctggttttgc gattctaaag 
     301 tgtaatgata aaaaattcaa gggaacagga ctatgtaaaa atgtcagcac agtacaatgt 
     361 acacatggaa ttagaccagt agtgtcaact caactgctgt taaatggcag tctagcagaa 
     421 gaagagatag taattagatc tcaaaatttc tcgaacaatg ctaaaaccat aatagtacag 
     481 ctgaaagaac ctgtaataat taattgtaca agacccaaca acaatacaag aaaaagtata 
     541 actataggac cagggaaagc attatataca acagaaataa taggaaatat aagacaagca 
     601 cattgtaaca ttagtgaaga acaatggggt aaaactttac atcagatagc tacaaaatta 
     661 agagaacaat ttaagaatgc aacaataata acctttaatc aatcctcagg aggggaccca 
     721 gaaattgtaa cacacagttt taattgtgga ggagaatttt tctactgtag tacatcacta 
     781 ctgtttaata gtacttggaa ttttactaca aaggaaaata ttacaagatt aaatggtact 
     841 atcacactcc catgtaaaat aaaacaaatt gtaaacatgt ggcaggaagt aggaaaagca 
     901 atgtatgccc ctcccattag aggacaaatt aactgttcat caaatattac agggctgtta 
     961 ttaacaagag atggtggtaa cggaagcagg gacaccgaga tcttcagacc tggaggggga 
    1021 gatatgaggg acaattggag aagtgaatta tataaatata aaataataaa aattgaacca 
    1081 ttaggagtag ctcccaccaa ggcaaagaga agagtggtgc aaagagaaaa aagaggagtg 
    1141 acgctaggag ctatgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcg 
    1201 tcaataacgc tgacggtaca ggccagacaa ttactgtctg gtatagtgca acagcagagc 
    1261 aatctgctga gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc 
    1321 aagcagctcc aggcaagagt cctagctgtg gaaagatacc taagggatca acagctccta 
    1381 gggatttggg gttgctctgg aaaactcatt tgcgccactg ctgtgccttg gaatgctagt 
    1441 tggagtaata aaactcatga tgagatttgg aataacatga cctggatgca atgggaaaga 
    1501 gaaattgaca attacacagg ctacatatac accttacttg aaaaatcgca aaaccaacaa 
    1561 gaaaagaatg aacaagaatt attagaatta gataaatggg caaatttgtg gaattggttc 
    1621 aacatatcaa attggctgtg gtatataaaa atattcataa tgatagtagg aggcttgata 
    1681 ggtttaagaa tagtttttac tgtactttct atagtaaata gagttaggca gggatattca 
    1741 ccattatcat ttcagacccg cctcccaacc ccgaggggac ccgacaggcc agaaggaatc 
    1801 gaagaagaag gtggagagcg agacagagac agatccggtc gattagcgga tggattctta 
    1861 gcgctcttct ggaacgatct gcggagcctg tgcctcttca gctaccacaa cttgagagac 
    1921 ttactcttga ttgtagcgag gactgtggaa attctgggac gcagggggtg ggaggccctc 
    1981 aaatattggt ggaatctcct acagtattgg agtcaggaac taaagaatag tgctattaac 
    2041 ttgcttaatg ccacagctgt agcagtagct gaggggacag ataggattat agaagtagta 
    2101 caaagaggct ttagagctat tctcaacata cctagaagaa taagacaggg cttggaactt 
    2161 gctttgcttt aaaatgggtg gaaagtggtc aaaacttaag gcgggatgga ctagagtaag 
    2221 ggaaaaaatg gaacaagctg aaccagcagc agagggagtg ggagcagcat ctcgagacct 
    2281 ggaaaaacat ggggcgctca caagtagcaa tacagcagct aataatgctg cttgtgcctg 
    2341 gctagaagca catgaggatg aggaggtggg ttttccagtc agacctcagg tacctttaag 
    2401 accaatgact ttcaaggcag ctctcgatct tagccacttt ttaaaagaaa tggggggact 
    2461 ggatgggcta atttactccc aaagaagaca agatatcctt gatttgtggg tctaccacac 
    2521 acaaggatac ttccctgatt ggcagaatta cacaccaggg ccagggacca gatttccact 
    2581 gacatttgga tggtgcttca agctagtacc agttgatcca gagcaggtag aaaaggccaa 
    2641 tgaaggagag aacaacagct tgttacaccc tatgagccaa catgggatgg atgacccgga 
    2701 gaaagaagtg ttagtgtgga agtttgacag ccttctagca tttcagcaca ttgcccgaga 
    2761 gaagcatccg gagtactaca aagactgctg acatcgagct ttctacaagg gactttccgc 
    2821 tggggacttt ccaggggagg cgcggcctgg gcgggactgg gagtggcgag ccctcagatg 
    2881 ctgcatataa gcagccgctt ttgcctgtac tgggtctctc tggttagacc agatctgagc 
    2941 ctgggagctc tctggcctac tagggaaccc a
//
last modified: Tue May 31 10:56 2022


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