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LOCUS	    FJ798366		    2981 bp    DNA     linear	VRL 21-APR-2009
DEFINITION  HIV-1 isolate 1077_1 from USA envelope glycoprotein (env), rev
	    protein (rev), and tat protein (tat) genes, partial cds; and nef
	    pseudogene, complete sequence
ACCESSION   FJ798366
VERSION     FJ798366.1 GI:226914825
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2981)
            Show all sequences for reference 1
  AUTHORS   Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
	    Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
	    Swanstrom,R.I.
  TITLE     Major coexisting human immunodeficiency virus type 1 env gene
	    subpopulations in the peripheral blood are produced by cells with
	    similar turnover rates and show little evidence of genetic
	    compartmentalization
  JOURNAL   J. Virol. 83 (9), 4068-4080 (2009)
  PUBMED    19211740
REFERENCE   2 (bases 1 to 2981)
            Show all sequences for reference 2
  AUTHORS   Ince,W.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2009) Lineberger Cancer Center, University of
	    North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## DBID 1002543484 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2981
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1077_1"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: B"
     gene	     <1..2181
		     /gene="env"
     CDS	     <1..2181
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACO90709.1"
		     /db_xref="GI:226914828"
		     /translation="LNCTDNLTLTNVNKKVNATVENGAQGEIKNCSFNITTDIRDKVK
		     KEHALFYSLDIVPIDKENGSYRLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKC
		     NDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSQNFSDNAKTIIV
		     QLTEPVIINCTRPNNNTSRRVSIGPGRAFRTAKIIGDIRKAHCNISGEQWDRTLHQIV
		     KKLRVQFGNTTIVFNQSSGGDPEIVTHSFNCGGEFFYCNTSRLFNSNWNKTAGTNTTG
		     LNGTTVTLQCRIKQIVNMWQEVGKAMYAPPISGQINCSSNITGLLLTRDGGIKNDTNG
		     TETFRPGGGDMRDNWRSELYKYKVIKVEPLGVAPTRAKRRVVQRDKRAVTLGAVFLGF
		     LGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARV
		     LAVERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKTHDEIWNNMTWMQWEREIDNY
		     TGYIYNLLEKSQNQQEKNEQELLELDKWASLWNWFNISNWLWYIKIFIMIVGGLIGLR
		     IVFTVLSIVNRVRQGYSPLSFQTRLPTPRGPDRPEGIEEEGGERDRDRSGRLADGFLA
		     LFWNDLRSLCLFSYHNLRDLLLIVARTVEILGRRGWEALKYWWNLLQYWSQELRKSAV
		     SLLNATAVAVAEGTDRIVEVVQRGFRAIIHIPRRVRQGLEIALL"
     gene	     <1765..2048
		     /gene="rev"
     CDS	     <1765..2048
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACO90708.1"
		     /db_xref="GI:226914827"
		     /translation="PPPNPEGTRQARRNRRRRWRARQRQIRSISGWILSSFLERPAEP
		     VPLQLPQLERLTLDCSEDCGNSGTQGVGGPQILVESPTVLESGTKEECC"
     gene	     <1765..1855
		     /gene="tat"
     CDS	     <1765..1855
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACO90707.1"
		     /db_xref="GI:226914826"
		     /translation="PASQPRGDPTGQKESKKKVESETETDPVD"
     gene	     2183..2801
		     /gene="nef"
		     /pseudo="nef"
     CDS	     2183..2801
		     /gene="nef"
		     /pseudo="nef"
		     /codon_start="1"
		     /transl_table="1"
BASE COUNT	986 a	 547 c	  750 g    698 t
ORIGIN
       1 ttaaattgca ctgataattt gactttgaca aatgtaaata aaaaggtaaa tgctactgtg 
      61 gagaatggtg ctcaaggaga aataaaaaac tgctctttca atatcaccac agacataaga 
     121 gataaggtga aaaaagaaca tgcacttttt tatagcctag atatagtgcc aatagataaa 
     181 gagaatggta gctataggtt gacaagttgt aacacctcag tcattacaca ggcctgtcca 
     241 aaggtatcct ttgagccaat tcccatacat tattgtgccc cagctggttt tgcgattcta 
     301 aagtgtaatg ataaaaagtt caatggaaca ggaccatgta aaaatgtcag cacagtacaa 
     361 tgtacacatg gaattaggcc agtagtgtca actcaactgc tgttaaatgg cagcttggca 
     421 gaagaagaga tagtaattag atctcaaaat ttctcggaca atgctaaaac cataatagta 
     481 cagctgacag aacctgtaat aattaattgt acaagaccca acaacaatac aagcagaaga 
     541 gtatctatag gaccagggag agcatttcgt acagcaaaaa taataggaga tataagaaaa 
     601 gcacattgta acatcagtgg agaacaatgg gataggactt tacatcagat agttaaaaaa 
     661 ttaagagtac aatttgggaa tacaacaata gtctttaatc aatcctcagg aggggaccca 
     721 gaaattgtaa cgcacagttt taattgtgga ggggaatttt tctactgtaa tacatcaaga 
     781 ctgtttaata gtaattggaa taaaactgca gggacaaata ctacaggatt aaatggtact 
     841 actgtcacac tccaatgtag aataaaacaa attgtaaaca tgtggcagga agtaggaaaa 
     901 gcaatgtatg ctcctcccat cagcggacaa attaactgtt catcaaatat tacagggctg 
     961 ttattaacaa gagatggtgg cattaagaat gacacgaacg gcaccgagac cttcagacct 
    1021 ggagggggag atatgaggga caattggaga agtgaattat ataaatataa agtaataaaa 
    1081 gttgaaccat taggagtagc tcccaccagg gcaaagagaa gagtggtgca gagagataaa 
    1141 agagcagtga cactaggagc tgtgttcctt gggttcttgg gagcagcagg aagcactatg 
    1201 ggcgcagcgt caataacgct gacggtacag gccagacaat tactgtctgg tatagtgcaa 
    1261 cagcagagca atctgctgag ggctattgag gcgcaacaac atctgttgca actcacagtc 
    1321 tggggcatca agcagctcca ggcaagagtc ctggctgtgg aaagatacct aagggatcaa 
    1381 cagctcctag gaatttgggg gtgctctgga aaactcattt gcaccactgc tgtgccttgg 
    1441 aatgctagtt ggagtaataa aactcatgat gagatttgga ataacatgac ctggatgcaa 
    1501 tgggaaagag aaattgacaa ttacacaggc tacatataca acttacttga aaaatcgcaa 
    1561 aaccaacaag aaaagaatga acaagaatta ttagaattag ataaatgggc aagtttgtgg 
    1621 aattggttca acatatcaaa ttggctgtgg tatataaaaa tattcataat gatagtagga 
    1681 ggcttgatag gtttaagaat agtttttact gtactttcta tagtaaatag agttaggcag 
    1741 ggatattcac cattatcatt tcagacccgc ctcccaaccc cgaggggacc cgacaggcca 
    1801 gaaggaatcg aagaagaagg tggagagcga gacagagaca gatccggtcg attagcggat 
    1861 ggattcttag ctcttttctg gaacgacctg cggagcctgt gcctcttcag ctaccacaac 
    1921 ttgagagact tactcttgat tgtagcgagg actgtggaaa ttctgggacg cagggggtgg 
    1981 gaggccctca aatattggtg gaatctccta cagtattgga gtcaggaact aaggaagagt 
    2041 gctgttagct tgcttaatgc cacagctgta gcagtagctg aggggacaga taggattgta 
    2101 gaagtagtac aaagaggttt tagagctatt atacacatac ctagaagagt gagacagggc 
    2161 ttggaaattg ctttgcttta agatgggtgg aaagtggtca aaacttaagg cgggatggac 
    2221 tagagttagg gaaaaaatgg aacaagctga accagcagca gagggagtgg gagcagcatc 
    2281 tcgagacctg gaaaaacatg gggcactcac aagtagcaat acagcagcta ataatgctgc 
    2341 ttgtgcctgg ctagaagcac atgaggatga ggaagtgggt tttccagtca gacctcaggt 
    2401 acctttaaga ccaatgactt tcaaggcagc cctcgatctt agccactttt taaaaagaaa 
    2461 tggggggact ggatgggcta atttactccc aaagaagaca agatatcctt gatttgtggg 
    2521 tctaccacac acaaggatac ttccctgatt ggcagaatta cacaccaggg ccagggccca 
    2581 gatttccact gacatttgga tggtgcttca agctagtacc agttgatcca gagcaggtag 
    2641 aaaaggccaa tgaaggagag aacaacagct tgctacaccc tatgagccag catgggatgg 
    2701 atgacccgga gaaagaagtg ttggtgtgga agtttgacag ccttctagca tttcagcaca 
    2761 ttgcccgaga gaagcatccg gagtactaca aagactgctg acatcgagct ttctacaagg 
    2821 gactttccgc tggggacttt ccaggggagg cgcggcctgg gcgggacggg gagtggcgag 
    2881 ccctcagatg ctgcatataa gcagccgctt ttgcctgtac tgggtctctc tggttagacc 
    2941 agatctgagc ctgggagctc tctggcctac tagggaaccc a
//
last modified: Tue May 31 10:56 2022


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