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LOCUS FJ798366 2981 bp DNA linear VRL 21-APR-2009
DEFINITION HIV-1 isolate 1077_1 from USA envelope glycoprotein (env), rev
protein (rev), and tat protein (tat) genes, partial cds; and nef
pseudogene, complete sequence
ACCESSION FJ798366
VERSION FJ798366.1 GI:226914825
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2981)
Show all sequences for reference 1
AUTHORS Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
Swanstrom,R.I.
TITLE Major coexisting human immunodeficiency virus type 1 env gene
subpopulations in the peripheral blood are produced by cells with
similar turnover rates and show little evidence of genetic
compartmentalization
JOURNAL J. Virol. 83 (9), 4068-4080 (2009)
PUBMED 19211740
REFERENCE 2 (bases 1 to 2981)
Show all sequences for reference 2
AUTHORS Ince,W.L.
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2009) Lineberger Cancer Center, University of
North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## DBID 1002543484 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2981
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1077_1"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene <1..2181
/gene="env"
CDS <1..2181
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACO90709.1"
/db_xref="GI:226914828"
/translation="LNCTDNLTLTNVNKKVNATVENGAQGEIKNCSFNITTDIRDKVK
KEHALFYSLDIVPIDKENGSYRLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKC
NDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSQNFSDNAKTIIV
QLTEPVIINCTRPNNNTSRRVSIGPGRAFRTAKIIGDIRKAHCNISGEQWDRTLHQIV
KKLRVQFGNTTIVFNQSSGGDPEIVTHSFNCGGEFFYCNTSRLFNSNWNKTAGTNTTG
LNGTTVTLQCRIKQIVNMWQEVGKAMYAPPISGQINCSSNITGLLLTRDGGIKNDTNG
TETFRPGGGDMRDNWRSELYKYKVIKVEPLGVAPTRAKRRVVQRDKRAVTLGAVFLGF
LGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVWGIKQLQARV
LAVERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKTHDEIWNNMTWMQWEREIDNY
TGYIYNLLEKSQNQQEKNEQELLELDKWASLWNWFNISNWLWYIKIFIMIVGGLIGLR
IVFTVLSIVNRVRQGYSPLSFQTRLPTPRGPDRPEGIEEEGGERDRDRSGRLADGFLA
LFWNDLRSLCLFSYHNLRDLLLIVARTVEILGRRGWEALKYWWNLLQYWSQELRKSAV
SLLNATAVAVAEGTDRIVEVVQRGFRAIIHIPRRVRQGLEIALL"
gene <1765..2048
/gene="rev"
CDS <1765..2048
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ACO90708.1"
/db_xref="GI:226914827"
/translation="PPPNPEGTRQARRNRRRRWRARQRQIRSISGWILSSFLERPAEP
VPLQLPQLERLTLDCSEDCGNSGTQGVGGPQILVESPTVLESGTKEECC"
gene <1765..1855
/gene="tat"
CDS <1765..1855
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ACO90707.1"
/db_xref="GI:226914826"
/translation="PASQPRGDPTGQKESKKKVESETETDPVD"
gene 2183..2801
/gene="nef"
/pseudo="nef"
CDS 2183..2801
/gene="nef"
/pseudo="nef"
/codon_start="1"
/transl_table="1"
BASE COUNT 986 a 547 c 750 g 698 t
ORIGIN
1 ttaaattgca ctgataattt gactttgaca aatgtaaata aaaaggtaaa tgctactgtg
61 gagaatggtg ctcaaggaga aataaaaaac tgctctttca atatcaccac agacataaga
121 gataaggtga aaaaagaaca tgcacttttt tatagcctag atatagtgcc aatagataaa
181 gagaatggta gctataggtt gacaagttgt aacacctcag tcattacaca ggcctgtcca
241 aaggtatcct ttgagccaat tcccatacat tattgtgccc cagctggttt tgcgattcta
301 aagtgtaatg ataaaaagtt caatggaaca ggaccatgta aaaatgtcag cacagtacaa
361 tgtacacatg gaattaggcc agtagtgtca actcaactgc tgttaaatgg cagcttggca
421 gaagaagaga tagtaattag atctcaaaat ttctcggaca atgctaaaac cataatagta
481 cagctgacag aacctgtaat aattaattgt acaagaccca acaacaatac aagcagaaga
541 gtatctatag gaccagggag agcatttcgt acagcaaaaa taataggaga tataagaaaa
601 gcacattgta acatcagtgg agaacaatgg gataggactt tacatcagat agttaaaaaa
661 ttaagagtac aatttgggaa tacaacaata gtctttaatc aatcctcagg aggggaccca
721 gaaattgtaa cgcacagttt taattgtgga ggggaatttt tctactgtaa tacatcaaga
781 ctgtttaata gtaattggaa taaaactgca gggacaaata ctacaggatt aaatggtact
841 actgtcacac tccaatgtag aataaaacaa attgtaaaca tgtggcagga agtaggaaaa
901 gcaatgtatg ctcctcccat cagcggacaa attaactgtt catcaaatat tacagggctg
961 ttattaacaa gagatggtgg cattaagaat gacacgaacg gcaccgagac cttcagacct
1021 ggagggggag atatgaggga caattggaga agtgaattat ataaatataa agtaataaaa
1081 gttgaaccat taggagtagc tcccaccagg gcaaagagaa gagtggtgca gagagataaa
1141 agagcagtga cactaggagc tgtgttcctt gggttcttgg gagcagcagg aagcactatg
1201 ggcgcagcgt caataacgct gacggtacag gccagacaat tactgtctgg tatagtgcaa
1261 cagcagagca atctgctgag ggctattgag gcgcaacaac atctgttgca actcacagtc
1321 tggggcatca agcagctcca ggcaagagtc ctggctgtgg aaagatacct aagggatcaa
1381 cagctcctag gaatttgggg gtgctctgga aaactcattt gcaccactgc tgtgccttgg
1441 aatgctagtt ggagtaataa aactcatgat gagatttgga ataacatgac ctggatgcaa
1501 tgggaaagag aaattgacaa ttacacaggc tacatataca acttacttga aaaatcgcaa
1561 aaccaacaag aaaagaatga acaagaatta ttagaattag ataaatgggc aagtttgtgg
1621 aattggttca acatatcaaa ttggctgtgg tatataaaaa tattcataat gatagtagga
1681 ggcttgatag gtttaagaat agtttttact gtactttcta tagtaaatag agttaggcag
1741 ggatattcac cattatcatt tcagacccgc ctcccaaccc cgaggggacc cgacaggcca
1801 gaaggaatcg aagaagaagg tggagagcga gacagagaca gatccggtcg attagcggat
1861 ggattcttag ctcttttctg gaacgacctg cggagcctgt gcctcttcag ctaccacaac
1921 ttgagagact tactcttgat tgtagcgagg actgtggaaa ttctgggacg cagggggtgg
1981 gaggccctca aatattggtg gaatctccta cagtattgga gtcaggaact aaggaagagt
2041 gctgttagct tgcttaatgc cacagctgta gcagtagctg aggggacaga taggattgta
2101 gaagtagtac aaagaggttt tagagctatt atacacatac ctagaagagt gagacagggc
2161 ttggaaattg ctttgcttta agatgggtgg aaagtggtca aaacttaagg cgggatggac
2221 tagagttagg gaaaaaatgg aacaagctga accagcagca gagggagtgg gagcagcatc
2281 tcgagacctg gaaaaacatg gggcactcac aagtagcaat acagcagcta ataatgctgc
2341 ttgtgcctgg ctagaagcac atgaggatga ggaagtgggt tttccagtca gacctcaggt
2401 acctttaaga ccaatgactt tcaaggcagc cctcgatctt agccactttt taaaaagaaa
2461 tggggggact ggatgggcta atttactccc aaagaagaca agatatcctt gatttgtggg
2521 tctaccacac acaaggatac ttccctgatt ggcagaatta cacaccaggg ccagggccca
2581 gatttccact gacatttgga tggtgcttca agctagtacc agttgatcca gagcaggtag
2641 aaaaggccaa tgaaggagag aacaacagct tgctacaccc tatgagccag catgggatgg
2701 atgacccgga gaaagaagtg ttggtgtgga agtttgacag ccttctagca tttcagcaca
2761 ttgcccgaga gaagcatccg gagtactaca aagactgctg acatcgagct ttctacaagg
2821 gactttccgc tggggacttt ccaggggagg cgcggcctgg gcgggacggg gagtggcgag
2881 ccctcagatg ctgcatataa gcagccgctt ttgcctgtac tgggtctctc tggttagacc
2941 agatctgagc ctgggagctc tctggcctac tagggaaccc a
//
last modified: Tue May 31 10:56 2022