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LOCUS FJ798325 2583 bp DNA linear VRL 21-APR-2009
DEFINITION HIV-1 isolate 101_TP3_16b from USA envelope glycoprotein (env)
gene, complete cds; vpu pseudogene, partial sequence; and rev
protein (rev) and tat protein (tat) genes, partial cds
ACCESSION FJ798325
VERSION FJ798325.1 GI:226914649
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2583)
Show all sequences for reference 1
AUTHORS Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
Swanstrom,R.I.
TITLE Major coexisting human immunodeficiency virus type 1 env gene
subpopulations in the peripheral blood are produced by cells with
similar turnover rates and show little evidence of genetic
compartmentalization
JOURNAL J. Virol. 83 (9), 4068-4080 (2009)
PUBMED 19211740
REFERENCE 2 (bases 1 to 2583)
Show all sequences for reference 2
AUTHORS Ince,W.L.
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2009) Lineberger Cancer Center, University of
North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## DBID 3087516 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2583
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="101_TP3_16b"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene 1..2583
/gene="env"
CDS 1..2583
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACO90574.1"
/db_xref="GI:226914652"
/translation="MRVKGIRRNYQRLWTWGTLLLGMLMICSTGEQLWVTVYYGVPVW
KEATTTLFCASDTKAYHTEVHNVWATHACVPTDPSPQEVVLGNVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNNTIHNNSNSREDLKEEIGEIKNCSF
NVTTVIKDKIQKEYALFYKSDVVPIDSGNNNSNYTSYRLIHCNTSVITQACPKVSFEP
IPIHFCAPAGFAILKCNNKTFTGQGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEKEV
VIRTENFTNNAKTIIVHLNESVTINCTRPNNNTRKGIHIGPGRAFYATGQIIGDIRQA
HCTLNITQWNNTLNQIVTKLRENFNLENKTIIFNHSSGGDPEIILHTFNCAGEFFYCN
TTQLFNSTWRANGNWTGTKGNDNGTVTLPCRIKQIINMWQQVGKAMYAPPIAGQITCI
SNITGILLTRDGGNTTNNNETFRPGGGDMRDNWRSELYKYKVVKIQPLGVAPTKARRR
VVQREKRAVGLGAMFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQ
QHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNTSWSNKSLN
DIWDNMTWMQWEKEIDNYTGLIYTLIEESQNQQEKNEQDLLALDKWASLWNWFDITRW
LWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPTQRGPDRPGGIEEE
GGERDRDTSGPLVDGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWEALK
YWWNLLQYWGQELKKSAVNLLNAIAIAVAEGTDRVIEIVQRAVRIILNIPTRIRQGLE
IALL"
gene <1..71
/gene="vpu"
/pseudo="vpu"
CDS <1..71
/gene="vpu"
/pseudo="vpu"
/codon_start="1"
/transl_table="1"
gene <2167..2450
/gene="rev"
CDS <2167..2450
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ACO90573.1"
/db_xref="GI:226914651"
/translation="PPPNPEGTRQARRNRRRRWRERQRHIRAVSGWILSNHLGRPAEP
VPLQLPPLERLTLDCNEDCGTPGTQGVGSPQVLVESPPVLGSGTKEECC"
gene <2167..2257
/gene="tat"
CDS <2167..2257
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ACO90572.1"
/db_xref="GI:226914650"
/translation="PASQPRGDPTGPEESKKKVERETETHPGR"
BASE COUNT 916 a 455 c 579 g 633 t
ORIGIN
1 atgagagtga aggggatcag gaggaattat cagcgcttat ggacatgggg caccttgctc
61 cttgggatgt taatgatctg tagtactgga gaacaattgt gggtcacagt ctattatggg
121 gtacctgtat ggaaagaagc aaccaccact ctattttgtg catcagatac taaagcatat
181 catacagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccagccca
241 caagaagtag tattgggaaa tgtaacagaa aattttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tttaaattgc actgataatt tgaacaatac tatccataac
421 aatagtaata gcagggaaga tctgaaagaa gaaataggag aaataaaaaa ctgttctttc
481 aatgtcacca cagtcataaa ggataagata cagaaagaat atgcactttt ttataaatct
541 gatgtagtac caatagatag tggaaataat aatagtaact atactagcta taggttgata
601 cattgtaaca cctcagtcat tacacaagcc tgtccaaagg tatcctttga accaattccc
661 atacattttt gcgccccggc tggttttgcg attctaaaat gtaacaataa gacattcaca
721 ggacaagggc catgcacaaa tgtcagtaca gtacaatgta cacatggaat caggccagta
781 gtatcaactc aactgctgtt aaatggtagt ctagcagaga aagaggtagt aatcagaact
841 gaaaatttca caaacaatgc taaaaccata atagtacacc tgaatgaatc tgtaaccatt
901 aattgtacaa gacccaacaa caatacaagg aaaggtatac atataggacc agggagagca
961 ttttatgcaa caggacaaat aataggagat ataagacaag cacattgtac tcttaatata
1021 acacaatgga ataacacttt aaatcagata gttacaaaat taagagaaaa ttttaatttg
1081 gaaaataaaa caataatctt taatcactcc tcaggagggg acccagaaat tatattgcac
1141 acttttaatt gtgcaggaga atttttctac tgtaatacaa cacaattgtt taatagtact
1201 tggagggcta atggtaattg gactggaact aaaggaaatg ataatggcac agtcacactt
1261 ccatgcagaa taaaacaaat tataaacatg tggcaacaag taggaaaagc aatgtatgcc
1321 cctcccattg caggacagat tacatgtatc tcaaatatta caggaatact attaacaaga
1381 gatggaggta ataccactaa caacaacgag accttcagac ctggaggagg agatatgagg
1441 gataattgga gaagtgaatt atataaatat aaagtagtga aaattcaacc attaggagta
1501 gcacctacca aggcaagaag aagagtggta caaagagaaa aaagagcagt gggattagga
1561 gctatgttcc ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcagtaacg
1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagaa caacttgctg
1681 agagctattg aggcgcaaca gcatctgttg caactcacag tctggggcat caagcagctc
1741 caggcaagag tcctggctgt ggaaagatac ctgaaggatc aacagctcct gggaatttgg
1801 ggttgctctg gaaaactcat ttgcaccact aatgtgcctt ggaatactag ttggagtaat
1861 aaatctctga atgacatttg ggacaacatg acctggatgc agtgggaaaa agaaattgac
1921 aattatacag gcttaatata caccttaatt gaagaatcgc aaaaccaaca agaaaagaat
1981 gaacaagact tattggcatt agataaatgg gcgagtttgt ggaattggtt tgacataaca
2041 agatggctgt ggtatataaa aatattcata atgatagtag ggggtttaat aggattaaga
2101 atagttttta ctgtactttc tatagtaaat agagttaggc agggctactc accattatca
2161 tttcagaccc gcctcccaac ccagagggga cccgacaggc ccggaggaat cgaagaagaa
2221 ggtggagaga gagacagaga cacatccggg ccgttagtgg atggattctt agcaatcatc
2281 tgggtcgacc tgcggagcct gtgcctcttc agctaccacc gcttgagaga cttactcttg
2341 attgtaacga ggactgtgga actcctggga cgcagggggt gggaagccct caagtattgg
2401 tggaatctcc tccagtattg gggtcaggaa ctaaagaaga gtgctgttaa cttgctcaac
2461 gccatagcca tagcagtagc tgaggggaca gatagggtta tagaaatagt acagagagct
2521 gttagaatta ttctcaacat acctacacga ataagacagg gcttggaaat tgccttgcta
2581 taa
//
last modified: Tue May 31 10:56 2022