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LOCUS	    FJ798325		    2583 bp    DNA     linear	VRL 21-APR-2009
DEFINITION  HIV-1 isolate 101_TP3_16b from USA envelope glycoprotein (env)
	    gene, complete cds; vpu pseudogene, partial sequence; and rev
	    protein (rev) and tat protein (tat) genes, partial cds
ACCESSION   FJ798325
VERSION     FJ798325.1 GI:226914649
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2583)
            Show all sequences for reference 1
  AUTHORS   Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
	    Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
	    Swanstrom,R.I.
  TITLE     Major coexisting human immunodeficiency virus type 1 env gene
	    subpopulations in the peripheral blood are produced by cells with
	    similar turnover rates and show little evidence of genetic
	    compartmentalization
  JOURNAL   J. Virol. 83 (9), 4068-4080 (2009)
  PUBMED    19211740
REFERENCE   2 (bases 1 to 2583)
            Show all sequences for reference 2
  AUTHORS   Ince,W.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2009) Lineberger Cancer Center, University of
	    North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## DBID 3087516 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2583
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="101_TP3_16b"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: B"
     gene	     1..2583
		     /gene="env"
     CDS	     1..2583
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACO90574.1"
		     /db_xref="GI:226914652"
		     /translation="MRVKGIRRNYQRLWTWGTLLLGMLMICSTGEQLWVTVYYGVPVW
		     KEATTTLFCASDTKAYHTEVHNVWATHACVPTDPSPQEVVLGNVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNNTIHNNSNSREDLKEEIGEIKNCSF
		     NVTTVIKDKIQKEYALFYKSDVVPIDSGNNNSNYTSYRLIHCNTSVITQACPKVSFEP
		     IPIHFCAPAGFAILKCNNKTFTGQGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEKEV
		     VIRTENFTNNAKTIIVHLNESVTINCTRPNNNTRKGIHIGPGRAFYATGQIIGDIRQA
		     HCTLNITQWNNTLNQIVTKLRENFNLENKTIIFNHSSGGDPEIILHTFNCAGEFFYCN
		     TTQLFNSTWRANGNWTGTKGNDNGTVTLPCRIKQIINMWQQVGKAMYAPPIAGQITCI
		     SNITGILLTRDGGNTTNNNETFRPGGGDMRDNWRSELYKYKVVKIQPLGVAPTKARRR
		     VVQREKRAVGLGAMFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQ
		     QHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNTSWSNKSLN
		     DIWDNMTWMQWEKEIDNYTGLIYTLIEESQNQQEKNEQDLLALDKWASLWNWFDITRW
		     LWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPTQRGPDRPGGIEEE
		     GGERDRDTSGPLVDGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWEALK
		     YWWNLLQYWGQELKKSAVNLLNAIAIAVAEGTDRVIEIVQRAVRIILNIPTRIRQGLE
		     IALL"
     gene	     <1..71
		     /gene="vpu"
		     /pseudo="vpu"
     CDS	     <1..71
		     /gene="vpu"
		     /pseudo="vpu"
		     /codon_start="1"
		     /transl_table="1"
     gene	     <2167..2450
		     /gene="rev"
     CDS	     <2167..2450
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACO90573.1"
		     /db_xref="GI:226914651"
		     /translation="PPPNPEGTRQARRNRRRRWRERQRHIRAVSGWILSNHLGRPAEP
		     VPLQLPPLERLTLDCNEDCGTPGTQGVGSPQVLVESPPVLGSGTKEECC"
     gene	     <2167..2257
		     /gene="tat"
     CDS	     <2167..2257
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACO90572.1"
		     /db_xref="GI:226914650"
		     /translation="PASQPRGDPTGPEESKKKVERETETHPGR"
BASE COUNT	916 a	 455 c	  579 g    633 t
ORIGIN
       1 atgagagtga aggggatcag gaggaattat cagcgcttat ggacatgggg caccttgctc 
      61 cttgggatgt taatgatctg tagtactgga gaacaattgt gggtcacagt ctattatggg 
     121 gtacctgtat ggaaagaagc aaccaccact ctattttgtg catcagatac taaagcatat 
     181 catacagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccagccca 
     241 caagaagtag tattgggaaa tgtaacagaa aattttaaca tgtggaaaaa taacatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa 
     361 ttaaccccac tctgtgttac tttaaattgc actgataatt tgaacaatac tatccataac 
     421 aatagtaata gcagggaaga tctgaaagaa gaaataggag aaataaaaaa ctgttctttc 
     481 aatgtcacca cagtcataaa ggataagata cagaaagaat atgcactttt ttataaatct 
     541 gatgtagtac caatagatag tggaaataat aatagtaact atactagcta taggttgata 
     601 cattgtaaca cctcagtcat tacacaagcc tgtccaaagg tatcctttga accaattccc 
     661 atacattttt gcgccccggc tggttttgcg attctaaaat gtaacaataa gacattcaca 
     721 ggacaagggc catgcacaaa tgtcagtaca gtacaatgta cacatggaat caggccagta 
     781 gtatcaactc aactgctgtt aaatggtagt ctagcagaga aagaggtagt aatcagaact 
     841 gaaaatttca caaacaatgc taaaaccata atagtacacc tgaatgaatc tgtaaccatt 
     901 aattgtacaa gacccaacaa caatacaagg aaaggtatac atataggacc agggagagca 
     961 ttttatgcaa caggacaaat aataggagat ataagacaag cacattgtac tcttaatata 
    1021 acacaatgga ataacacttt aaatcagata gttacaaaat taagagaaaa ttttaatttg 
    1081 gaaaataaaa caataatctt taatcactcc tcaggagggg acccagaaat tatattgcac 
    1141 acttttaatt gtgcaggaga atttttctac tgtaatacaa cacaattgtt taatagtact 
    1201 tggagggcta atggtaattg gactggaact aaaggaaatg ataatggcac agtcacactt 
    1261 ccatgcagaa taaaacaaat tataaacatg tggcaacaag taggaaaagc aatgtatgcc 
    1321 cctcccattg caggacagat tacatgtatc tcaaatatta caggaatact attaacaaga 
    1381 gatggaggta ataccactaa caacaacgag accttcagac ctggaggagg agatatgagg 
    1441 gataattgga gaagtgaatt atataaatat aaagtagtga aaattcaacc attaggagta 
    1501 gcacctacca aggcaagaag aagagtggta caaagagaaa aaagagcagt gggattagga 
    1561 gctatgttcc ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcagtaacg 
    1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagaa caacttgctg 
    1681 agagctattg aggcgcaaca gcatctgttg caactcacag tctggggcat caagcagctc 
    1741 caggcaagag tcctggctgt ggaaagatac ctgaaggatc aacagctcct gggaatttgg 
    1801 ggttgctctg gaaaactcat ttgcaccact aatgtgcctt ggaatactag ttggagtaat 
    1861 aaatctctga atgacatttg ggacaacatg acctggatgc agtgggaaaa agaaattgac 
    1921 aattatacag gcttaatata caccttaatt gaagaatcgc aaaaccaaca agaaaagaat 
    1981 gaacaagact tattggcatt agataaatgg gcgagtttgt ggaattggtt tgacataaca 
    2041 agatggctgt ggtatataaa aatattcata atgatagtag ggggtttaat aggattaaga 
    2101 atagttttta ctgtactttc tatagtaaat agagttaggc agggctactc accattatca 
    2161 tttcagaccc gcctcccaac ccagagggga cccgacaggc ccggaggaat cgaagaagaa 
    2221 ggtggagaga gagacagaga cacatccggg ccgttagtgg atggattctt agcaatcatc 
    2281 tgggtcgacc tgcggagcct gtgcctcttc agctaccacc gcttgagaga cttactcttg 
    2341 attgtaacga ggactgtgga actcctggga cgcagggggt gggaagccct caagtattgg 
    2401 tggaatctcc tccagtattg gggtcaggaa ctaaagaaga gtgctgttaa cttgctcaac 
    2461 gccatagcca tagcagtagc tgaggggaca gatagggtta tagaaatagt acagagagct 
    2521 gttagaatta ttctcaacat acctacacga ataagacagg gcttggaaat tgccttgcta 
    2581 taa
//
last modified: Tue May 31 10:56 2022


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