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LOCUS FJ578070 2725 bp DNA linear VRL 14-MAY-2009
DEFINITION Simian immunodeficiency virus isolate AH4X.PK.D5 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; envelope glycoprotein (env) gene, complete cds; and nef
protein (nef) gene, partial cds
ACCESSION FJ578070
VERSION FJ578070.1 GI:229831001
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2725)
Show all sequences for reference 1
AUTHORS Keele,B.F., Li,H., Learn,G.H., Hraber,P., Giorgi,E.E., Grayson,T.,
Sun,C., Chen,Y., Yeh,W.W., Letvin,N.L., Mascola,J.R., Nabel,G.J.,
Haynes,B.F., Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H.
and Shaw,G.M.
TITLE Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or
SIVmac251 recapitulates human mucosal infection by HIV-1
JOURNAL J. Exp. Med. 206 (5), 1117-1134 (2009)
PUBMED 19414559
REFERENCE 2 (bases 1 to 2725)
Show all sequences for reference 2
AUTHORS Keele,B.F., Li,H., Learn,G.H., Giorgi,E.E., Grayson,T., Sun,C.,
Hraber,P.T., Yeh,W., Letvin,N.L., Nabel,G.J., Haynes,B.F.,
Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H. and
Shaw,G.M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2008) Department of Medicine, University of
Alabama at Birmingham, 720 20th Street South, KAUL840b, Birmingham,
AL 35294-0024, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code AH4X Sequence name
AH4X.PK.D5 Sample date 12-27-05 Viral load 2611600 Species MAC
Sample tissue plasma Inoculum name SIVmac 251 Amplification
strategy SGA Infection route Intrarectal Dose 60,000,000 virions
DBID 1202601807 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2725
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="AH4X.PK.D5"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/collection_date="27-Dec-2005"
gene 1..2541
/gene="rev"
CDS join(1..70,2288..2541)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ACQ85793.1"
/db_xref="GI:229831002"
/translation="MSSHGREEELRKRLRLIHLLHQTNSYPTGPGTANQRRQRRRRWR
RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTKDS
RSPQD"
gene <1..2384
/gene="tat"
CDS join(<1..70,2288..2384)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="ACQ85794.1"
/db_xref="GI:229831003"
/translation="EQSRKRRRTPKKAKANTSSASNKLIPNRTRHCQPEKAKKETVEK
AVATAPGLGR"
gene 77..2725
/gene="env"
CDS 77..2725
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACQ85795.1"
/db_xref="GI:229831004"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDKWGLTKSSTITTTAPTTPNTTSTKSIDMVNETSSCIVHDNC
TGLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSI
IQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTST
WFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFH
SQPVNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGINNTDKINLTAPRGGDPKVT
FMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYVPCHIRQIINTWHKVGKN
VYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELEDYKLVEITPI
GLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQ
QQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTV
PWPNASLTPNWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG
NWFDLASWIKYIQYGVYVVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHT
QQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRAY
QILQPILQRLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLW
ETLRRGGRWILAIPRRIRQGLELTLL"
gene 2559..>2725
/gene="nef"
CDS 2559..>2725
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ACQ85796.1"
/db_xref="GI:229831005"
/translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
GLGKGLSSRSC"
BASE COUNT 869 a 518 c 660 g 678 t
ORIGIN
1 atgagcagtc acggaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg
61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac
241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt
301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa
421 aagtgagaca gataaatggg gattgacaaa atcatcaaca ataacaacaa cagcaccaac
481 aacaccaaat acaacatcaa caaagtcaat agacatggtc aatgagacta gttcttgtat
541 agttcatgat aattgcacag gcttggaaca agagcaaatg ataggctgta aattcaacat
601 gacagggtta aaaagagaca agacaaagga gtacaatgaa acttggtact ctacagattt
661 ggtttgtgaa caagggaata gcactgataa tgaaagtaga tgttacatga atcactgtaa
721 cacttctatt atccaagagt cttgtgacaa gcattattgg gatactatta gatttaggta
781 ttgtgcacct ccaggttatg ctttgcttag atgtaatgac acaaattatt caggctttat
841 gcctaaatgt tctaaggtgg tggtctcttc atgcacaagg atgatggaga cacagacttc
901 tacttggttt ggctttaatg gaactagagc agaaaataga acttatattt actggcatgg
961 tagggataat aggactataa ttagtttaaa taagtattat aatctaacaa tgaaatgtag
1021 aagaccagga aataagacag ttttgccagt caccattatg tctggattgg ttttccactc
1081 acaaccagtc aatgagaggc caaaccaggc atggtgttgg tttggaggaa attggaagga
1141 tgcaataaaa gaggtgaagc agaccattgt caaacatccc aggtatactg gaattaacaa
1201 tactgataaa atcaatttga cggctcctag aggaggagat ccaaaagtta ccttcatgtg
1261 gacaaattgc agaggagagt ttctctactg taaaatgaat tggtttctaa attgggtaga
1321 ggatagggat gtaactaccc agaggccaaa ggaacggcat agaaggaatt acgtgccgtg
1381 tcatattaga caaataatca acacttggca taaagtaggc aaaaatgttt atttgcctcc
1441 aagagaggga gacctcacgt gtaactccac agtgaccagt ctcatagcaa acatagattg
1501 gactgatgga aaccaaacta atatcaccat gagtgcagag gtggcagaac tgtatcgatt
1561 ggagttggaa gattataaat tagtagagat cactccgatt ggcttggccc ccacagatgt
1621 gaagaggtac actactggtg gcacctcaag aaataaaaga ggggtctttg tgctagggtt
1681 cttgggtttt ctcgcaacgg caggttctgc aatgggcgcg gcgtcgttga cgctgaccgc
1741 tcagtcccgg actttattgg ctgggatagt gcagcaacag caacagctgt tggacgtggt
1801 caagagacaa caagaattgt tgcgactgac cgtctgggga acaaagaacc tccagactag
1861 ggtcactgcc atcgagaagt acttaaagga ccaggcgcag ctgaatgctt ggggatgtgc
1921 gtttagacaa gtctgccaca ctactgtacc atggccaaat gcaagtctaa caccaaattg
1981 gaacaatgac acttggcaag agtgggagcg aaaggttgac ttcttggagg aaaatataac
2041 agccctccta gaagaggcac aaattcaaca agagaagaac atgtatgaat tacaaaagtt
2101 gaatagctgg gatgtgtttg gcaattggtt tgaccttgct tcttggataa agtatataca
2161 atatggagtt tatgtagttg taggagtaat actgttaaga atagtgatct atatagtaca
2221 aatgctagct aagttaaggc aggggtatag gccagtgttc tcttccccac cctcttattt
2281 ccagcagact catacccaac aggacccggc actgccaacc agagaaggca aagaaggaga
2341 cggtggagaa ggcggtggca acagctcctg gccttggcag atagaatata ttcatttcct
2401 gatccgccaa ctgatacgcc tcttgacttg gctattcagc aactgcagaa ccttgctatc
2461 gagagcatac cagatcctcc aaccaatact ccagaggctc tctgcgaccc tacgaaggat
2521 tcgagaagtc ctcaggactg aactgaccta cctacaatat gggtggagct atttccatga
2581 ggcggtccaa gccggctgga gatctgcgac agagactctt gcgggcgcgt ggggagactt
2641 atgggagact cttaggagag gtggaagatg gatcctcgca atccctagga ggattaggca
2701 agggcttgag ctcacgctct tgtga
//
last modified: Tue May 31 10:56 2022