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LOCUS FJ530625 767 bp DNA linear VRL 01-FEB-2009
DEFINITION HIV-1 isolate in78rt from India reverse transcriptase (pol) gene,
partial cds
ACCESSION FJ530625
VERSION FJ530625.1 GI:221858281
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 767)
Show all sequences for reference 1
AUTHORS Deshpande,A., Jauvin,V., Pinson,P., Jeannot,A.C. and Fleury,H.J.
TITLE Phylogenetic analysis of HIV-1 reverse transcriptase sequences from
382 patients recruited in JJ Hospital of Mumbai, India, between
2002 and 2008.
JOURNAL AIDS Res. Hum. Retroviruses. 25(6); 633-5 (2009)
PUBMED 19534630
REFERENCE 2 (bases 1 to 767)
Show all sequences for reference 2
AUTHORS Fleury,H.J., Jauvin,V., Pinson,P., Jeannot,A.C. and Deshpande,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2008) Universite Bordeaux 2, Laboratoire de
Virologie EA2968, 146 rue Leo Saignat, Bordeaux 33076, France
FEATURES Location/Qualifiers
source 1..767
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="in78rt"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="2002"
gene <1..>767
/gene="pol"
CDS <1..>767
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ACM41098.1"
/db_xref="GI:221858282"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKE
GKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIF
QASMTKILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQHRAKIEELRDHLLKWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVN"
BASE COUNT 303 a 128 c 158 g 174 t 4 other
ORIGIN
1 ccaattagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaag
61 gttaaacaat ggccattgac agaagagaaa ataaaagcat taacagcaat ttgtgatgaa
121 atggagaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccaata
181 tttgccataa aaaagaagga cagtactaag tggagaaaat tagtagattt cagggaactc
241 aataaaagaa ctcaagattt ttgggaagtc caattaggaa taccacaccc agcagggtta
301 aaaaagaaaa aatcagtgac agtactrgat gtgggggatg catatttttc agttccttta
361 tatgaagact tcaggaaata tactgcattc accataccta gtagaaacaa tgaaacacca
421 gggattaggt atcaatataa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 caggctagca tgacaaaaat tttagagccc tttagggcac aaaatccaga aatagtcatc
541 tatcaataya tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca
601 aaaatagarg agttaagaga ccatctgtta aaatggggat ttaccacacc agacaagaaa
661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga taaatggaca
721 gtrcagccaa tacagttgcc agaaaaggat agctggactg tcaatga
//
last modified: Tue May 31 10:56 2022