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LOCUS	    FJ530625		     767 bp    DNA     linear	VRL 01-FEB-2009
DEFINITION  HIV-1 isolate in78rt from India reverse transcriptase (pol) gene,
	    partial cds
ACCESSION   FJ530625
VERSION     FJ530625.1 GI:221858281
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 767)
            Show all sequences for reference 1
  AUTHORS   Deshpande,A., Jauvin,V., Pinson,P., Jeannot,A.C. and Fleury,H.J.
  TITLE     Phylogenetic analysis of HIV-1 reverse transcriptase sequences from
	    382 patients recruited in JJ Hospital of Mumbai, India, between
	    2002 and 2008.
  JOURNAL   AIDS Res. Hum. Retroviruses. 25(6); 633-5 (2009)
  PUBMED    19534630
REFERENCE   2 (bases 1 to 767)
            Show all sequences for reference 2
  AUTHORS   Fleury,H.J., Jauvin,V., Pinson,P., Jeannot,A.C. and Deshpande,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2008) Universite Bordeaux 2, Laboratoire de
	    Virologie EA2968, 146 rue Leo Saignat, Bordeaux 33076, France
FEATURES             Location/Qualifiers
     source	     1..767
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="in78rt"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="2002"
     gene	     <1..>767
		     /gene="pol"
     CDS	     <1..>767
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ACM41098.1"
		     /db_xref="GI:221858282"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKE
		     GKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIF
		     QASMTKILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQHRAKIEELRDHLLKWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVN"
BASE COUNT	303 a	 128 c	  158 g    174 t      4 other
ORIGIN
       1 ccaattagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaag 
      61 gttaaacaat ggccattgac agaagagaaa ataaaagcat taacagcaat ttgtgatgaa 
     121 atggagaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccaata 
     181 tttgccataa aaaagaagga cagtactaag tggagaaaat tagtagattt cagggaactc 
     241 aataaaagaa ctcaagattt ttgggaagtc caattaggaa taccacaccc agcagggtta 
     301 aaaaagaaaa aatcagtgac agtactrgat gtgggggatg catatttttc agttccttta 
     361 tatgaagact tcaggaaata tactgcattc accataccta gtagaaacaa tgaaacacca 
     421 gggattaggt atcaatataa tgtgcttcca cagggatgga aaggatcacc agcaatattc 
     481 caggctagca tgacaaaaat tttagagccc tttagggcac aaaatccaga aatagtcatc 
     541 tatcaataya tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca 
     601 aaaatagarg agttaagaga ccatctgtta aaatggggat ttaccacacc agacaagaaa 
     661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga taaatggaca 
     721 gtrcagccaa tacagttgcc agaaaaggat agctggactg tcaatga
//
last modified: Tue May 31 10:56 2022


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