HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ463480		     297 bp    DNA     linear	VRL 23-JUN-2009
DEFINITION  HIV-1 isolate AE-PR114 clone 3 from Thailand protease (pol) gene,
	    partial cds
ACCESSION   FJ463480
VERSION     FJ463480.1 GI:238560154
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Auwanit,W., Isarangkura-Na-Ayuthaya,P., Kasornpikul,D., Ikuta,K.,
	    Sawanpanyalert,P. and Kameoka,M.
  TITLE     Detection of drug resistance-associated and background mutations in
	    human immunodeficiency virus type 1 CRF01_AE protease and reverse
	    transcriptase derived from drug treatment-naive patients residing
	    in central Thailand
  JOURNAL   AIDS Res. Hum. Retroviruses 25 (6), 625-631 (2009)
  PUBMED    19500016
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Isarangkura-Na-Ayuthaya,P., Auwanit,W. and Kameoka,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-NOV-2008) Department of Medical Sciences, Ministry of
	    Public Health, National Institute of Health, 88/7 Tiwanon Rd.,
	    Muang, Nonthaburi 11000, Thailand
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="AE-PR114"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="3"
		     /country="Thailand: central Thailand"
		     /collection_date="2006"
		     /note="subtype: CRF01_AE"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="ACR46238.1"
		     /db_xref="GI:238560155"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEICGKRAVGTVLVGPTPVNIIGRNMLTQIGCTLNF"
BASE COUNT	109 a	  45 c	   68 g     75 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacagtaa aaataggggg acagctgaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagagataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcaatatgat 
     181 cagataccta tagaaatttg tggaaaaagg gctgtaggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gctgtacttt aaatttt
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health