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LOCUS	    FJ443223		    2568 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate CHV0005396 from South Africa envelope glycoprotein
	    (env) pseudogene, complete sequence
ACCESSION   FJ443223
VERSION     FJ443223.1 GI:226969057
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2568)
            Show all sequences for reference 1
  AUTHORS   Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
	    Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
	    Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
	    Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
	    Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
	    Korber,B.T., Swanstrom,R. and Williamson,C.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Quantitating the multiplicity of infection with human
	    immunodeficiency virus type 1 subtype C reveals a non-poisson
	    distribution of transmitted variants
  JOURNAL   J. Virol. 83 (8), 3556-3567 (2009)
  PUBMED    19193811
REFERENCE   2 (bases 1 to 2568)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.T.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## HLA type A2301 A2301 B801 B1510 C701
	    C1601 Sequence Name CHV0005396 Patient code CAP8 Isolate name
	    CAP8.1.07H10 Subtype C Patient cohort CHAVI001 Sample date May 11
	    2005 Sample tissue plasma Amplification strategy SGA Risk Factor SG
	    Patient age 38 Patient sex F Fiebig Stage 5 Viral Load 207000
	    Sample city Durban DBID 3763887086 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2568
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CHV0005396"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="subtype: C"
     gene	     1..2568
		     /gene="env"
		     /note="envelope glycoprotein"
		     /pseudo="envelope glycoprotein"
BASE COUNT	902 a	 423 c	  620 g    623 t
ORIGIN
       1 atgagagtga gggggatatt gaggaattgg caacaatggt ggatatggag cagcttaggc 
      61 ttttggatgt taatgatttg tagtgtggtg gggaacttgt gggtcacggt ctattatgga 
     121 gtaccggtgt ggaaagaagc aaaaactact ctattctgtg catcagatgc taaagcatat 
     181 gagacagaag tgcataatgt ctgggctaca catgcctgtg tgcccacaga ccccgaccca 
     241 aaagaatttg ttttgggaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atgaagatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag 
     361 ttgaccccac tctgtgtcac tttaaattgt acaaatgttt atgttaatag tactgggaat 
     421 gatactggtg gtacctacaa caatagtgta gatggagaaa tgagaaattg ctctttcaaa 
     481 ataaccacag aactaaaaga taagaaacag aaagtgtatg cactttttta taaacttgat 
     541 atagtatcac ttgatggtaa taatgaaagc tatagattaa taaattgtaa tacctcagcc 
     601 ataacacaag cctgtccaaa ggtctcattt gacccaattc ctatacatta ttgtgctcca 
     661 gctggttatg cgattctaaa gtgtaataat aagacattca atgggacagg accatgccag 
     721 aatgtcagca cagtacaatg cacacatgga attaagccag tagtatcaac tcaactactg 
     781 ttaaatggta gcctagcaga agaagaaata atgatcagat ctgaaaatct gacagacaat 
     841 gccaaaacaa taatagtaca gcttaataaa tctgtagaaa ttacttgtac aagacccaat 
     901 aataacacaa gaaaaagtat aagaataggg ccaggacaaa cattctatgc aacaggagac 
     961 ataataggag acataagaca agcatactgt aacatcagtc gggaaaattg gactgaaact 
    1021 gtacaaaggg taagaggaaa attacaagaa cacttcaata aaacaataat gtttaaccaa 
    1081 tcctcaggag gggacctaga agttacaaca cataccttta attgtggagg agaatttttc 
    1141 tattgcaata catcaaaact gtttaatgag agcatgttaa atagtacaga caatagtaca 
    1201 aaagaggatg taaacatcat actcccatgc aggataaaac aaattataaa catgtggcag 
    1261 gaggtaggac gagcaatgta tgcccctccc attgcaggaa acataatatg tacctcaaat 
    1321 atcacagggc tactactgac acgtgatgga gggccagaga atggcacaga tacagtcaga 
    1381 cctgtaggag gagatatgag gaacaattgg agaagtgaat tatataaata taaggtggta 
    1441 gaaattaagc cattgggaat agcacccact aaggcaaaaa ggagagtggt ggagaggaga 
    1501 gaaaaaagag cagtgggaat aggagctgtg ttccttgggt tcttgggagc agcaggaagc 
    1561 actatgggcg cagcgtcaat gacgctgacg gtacaggcca gacaattgtt gtctggaata 
    1621 gtgcaacagc aaagcaattt gctgagggct atagaggcgc aacagcatat gttgcaactc 
    1681 acggtctggg gagttaagca actccagaca agagtcctgg ctatagaaag atacctaaag 
    1741 gatcaacagc tcctagggat ttggggctgc tctggaaaac tcatctgcac cactgctgta 
    1801 ccttggaact ccagttggag taataaatct caagatgata tttggggtaa catgacctgg 
    1861 atgcagtggg atagagaaat tagtaattac acaacaacaa tatacagatt gcttgaagac 
    1921 tcgcaaaacc agcaggaaca aaatgagaaa gagttattgg cattggacag ttggaaaaat 
    1981 ctgtggaatt ggtttgacat aacaaattgg ctgtggtata taaaaatatt tataataata 
    2041 gtaggaggct tgataggctt gagaataatt tttgctgtgc tttctgtagt gaatagagtt 
    2101 aggcagggat actcaccttt gtcgttgcag acccttaccc cgaaccccag gggactcgac 
    2161 aggctcggaa gaatcgaaga agaaggtgga gagcaagaca gaaacagatc cattcgatta 
    2221 gtgaacggat tcttagcact tgcctgggaa gatctgcgga gcctgtgcct tttcagctac 
    2281 caccgattga gagacttcat attgattgta gtgagagcgg tggaacttct gggacgcagc 
    2341 agtctcaggg gactacagag ggggtgggaa atccttaagt atctgggaag tcttatacag 
    2401 tattggggtc tggagctaaa aaggagtgct attagtctgc ttgataccat agcaatagca 
    2461 gtagctgagg gaacagatag aattatagaa gtaatacaaa gaatttgtag agctatctgc 
    2521 aacataccta gaagagtaag acagggcttt gaagcagctt tgcaataa
//
last modified: Tue May 31 10:56 2022


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