View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS FJ443223 2568 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate CHV0005396 from South Africa envelope glycoprotein
(env) pseudogene, complete sequence
ACCESSION FJ443223
VERSION FJ443223.1 GI:226969057
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2568)
Show all sequences for reference 1
AUTHORS Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
Korber,B.T., Swanstrom,R. and Williamson,C.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Quantitating the multiplicity of infection with human
immunodeficiency virus type 1 subtype C reveals a non-poisson
distribution of transmitted variants
JOURNAL J. Virol. 83 (8), 3556-3567 (2009)
PUBMED 19193811
REFERENCE 2 (bases 1 to 2568)
Show all sequences for reference 2
AUTHORS Hraber,P.T.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## HLA type A2301 A2301 B801 B1510 C701
C1601 Sequence Name CHV0005396 Patient code CAP8 Isolate name
CAP8.1.07H10 Subtype C Patient cohort CHAVI001 Sample date May 11
2005 Sample tissue plasma Amplification strategy SGA Risk Factor SG
Patient age 38 Patient sex F Fiebig Stage 5 Viral Load 207000
Sample city Durban DBID 3763887086 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2568
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CHV0005396"
/db_xref="taxon:11676"
/country="South Africa"
/note="subtype: C"
gene 1..2568
/gene="env"
/note="envelope glycoprotein"
/pseudo="envelope glycoprotein"
BASE COUNT 902 a 423 c 620 g 623 t
ORIGIN
1 atgagagtga gggggatatt gaggaattgg caacaatggt ggatatggag cagcttaggc
61 ttttggatgt taatgatttg tagtgtggtg gggaacttgt gggtcacggt ctattatgga
121 gtaccggtgt ggaaagaagc aaaaactact ctattctgtg catcagatgc taaagcatat
181 gagacagaag tgcataatgt ctgggctaca catgcctgtg tgcccacaga ccccgaccca
241 aaagaatttg ttttgggaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg
301 gatcagatgc atgaagatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag
361 ttgaccccac tctgtgtcac tttaaattgt acaaatgttt atgttaatag tactgggaat
421 gatactggtg gtacctacaa caatagtgta gatggagaaa tgagaaattg ctctttcaaa
481 ataaccacag aactaaaaga taagaaacag aaagtgtatg cactttttta taaacttgat
541 atagtatcac ttgatggtaa taatgaaagc tatagattaa taaattgtaa tacctcagcc
601 ataacacaag cctgtccaaa ggtctcattt gacccaattc ctatacatta ttgtgctcca
661 gctggttatg cgattctaaa gtgtaataat aagacattca atgggacagg accatgccag
721 aatgtcagca cagtacaatg cacacatgga attaagccag tagtatcaac tcaactactg
781 ttaaatggta gcctagcaga agaagaaata atgatcagat ctgaaaatct gacagacaat
841 gccaaaacaa taatagtaca gcttaataaa tctgtagaaa ttacttgtac aagacccaat
901 aataacacaa gaaaaagtat aagaataggg ccaggacaaa cattctatgc aacaggagac
961 ataataggag acataagaca agcatactgt aacatcagtc gggaaaattg gactgaaact
1021 gtacaaaggg taagaggaaa attacaagaa cacttcaata aaacaataat gtttaaccaa
1081 tcctcaggag gggacctaga agttacaaca cataccttta attgtggagg agaatttttc
1141 tattgcaata catcaaaact gtttaatgag agcatgttaa atagtacaga caatagtaca
1201 aaagaggatg taaacatcat actcccatgc aggataaaac aaattataaa catgtggcag
1261 gaggtaggac gagcaatgta tgcccctccc attgcaggaa acataatatg tacctcaaat
1321 atcacagggc tactactgac acgtgatgga gggccagaga atggcacaga tacagtcaga
1381 cctgtaggag gagatatgag gaacaattgg agaagtgaat tatataaata taaggtggta
1441 gaaattaagc cattgggaat agcacccact aaggcaaaaa ggagagtggt ggagaggaga
1501 gaaaaaagag cagtgggaat aggagctgtg ttccttgggt tcttgggagc agcaggaagc
1561 actatgggcg cagcgtcaat gacgctgacg gtacaggcca gacaattgtt gtctggaata
1621 gtgcaacagc aaagcaattt gctgagggct atagaggcgc aacagcatat gttgcaactc
1681 acggtctggg gagttaagca actccagaca agagtcctgg ctatagaaag atacctaaag
1741 gatcaacagc tcctagggat ttggggctgc tctggaaaac tcatctgcac cactgctgta
1801 ccttggaact ccagttggag taataaatct caagatgata tttggggtaa catgacctgg
1861 atgcagtggg atagagaaat tagtaattac acaacaacaa tatacagatt gcttgaagac
1921 tcgcaaaacc agcaggaaca aaatgagaaa gagttattgg cattggacag ttggaaaaat
1981 ctgtggaatt ggtttgacat aacaaattgg ctgtggtata taaaaatatt tataataata
2041 gtaggaggct tgataggctt gagaataatt tttgctgtgc tttctgtagt gaatagagtt
2101 aggcagggat actcaccttt gtcgttgcag acccttaccc cgaaccccag gggactcgac
2161 aggctcggaa gaatcgaaga agaaggtgga gagcaagaca gaaacagatc cattcgatta
2221 gtgaacggat tcttagcact tgcctgggaa gatctgcgga gcctgtgcct tttcagctac
2281 caccgattga gagacttcat attgattgta gtgagagcgg tggaacttct gggacgcagc
2341 agtctcaggg gactacagag ggggtgggaa atccttaagt atctgggaag tcttatacag
2401 tattggggtc tggagctaaa aaggagtgct attagtctgc ttgataccat agcaatagca
2461 gtagctgagg gaacagatag aattatagaa gtaatacaaa gaatttgtag agctatctgc
2521 aacataccta gaagagtaag acagggcttt gaagcagctt tgcaataa
//
last modified: Tue May 31 10:56 2022