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LOCUS	    FJ443188		    2598 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate CHV0004193 from South Africa envelope glycoprotein
	    (env) pseudogene, complete sequence
ACCESSION   FJ443188
VERSION     FJ443188.1 GI:226968931
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2598)
            Show all sequences for reference 1
  AUTHORS   Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
	    Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
	    Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
	    Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
	    Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
	    Korber,B.T., Swanstrom,R. and Williamson,C.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Quantitating the multiplicity of infection with human
	    immunodeficiency virus type 1 subtype C reveals a non-poisson
	    distribution of transmitted variants
  JOURNAL   J. Virol. 83 (8), 3556-3567 (2009)
  PUBMED    19193811
REFERENCE   2 (bases 1 to 2598)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.T.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## HLA type A6802 A6802 B1510 B1510 C304
	    C304 Sequence Name CHV0004193 Patient code CAP210 Isolate name
	    CAP210.1.00TA2 Subtype C Patient cohort CHAVI001 CD4 count 332
	    Sample date Jan 1 2005 Sample tissue plasma Amplification strategy
	    SGA Risk Factor SG Patient age 43 Patient sex F Fiebig Stage 1 or 2
	    Viral Load 468000 Sample city Durban DBID 2280556746
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2598
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CHV0004193"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="subtype: C"
     gene	     1..2598
		     /gene="env"
		     /note="envelope glycoprotein"
		     /pseudo="envelope glycoprotein"
BASE COUNT	928 a	 430 c	  608 g    632 t
ORIGIN
       1 atgagagtga tggggataca gaggaattgg cagcaatggg ggatatgggg catcttaggc 
      61 ttttggctgt taatgatctg tagtgggatg ggaaacttgt gggtcacagt atattatggg 
     121 gtacctgtgt ggaaagaggc aaaaaccacc ttattttgtg catcagacgc taaaggatat 
     181 gacacagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatag ttttggaaaa tgtaacagaa aactttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atcaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag 
     361 ttaaccccac tctgtgttac tttaacttgt agcgatgcta catataataa tggtacgaat 
     421 agtactgata ctatgaaaat ttgttctttc aatgcaacca cagaactaag agataagaaa 
     481 aagaaggagt atgcactttt ttatagactt gatatagtac cacttaagaa tgaaagtgag 
     541 agtcagaatt ttagtgagta tatattaata aactgtaata cctcaaccat agcacaagcc 
     601 tgtccaaagg tctcttttga cccaattcct atacattatt gtgctccagc gggttatgcg 
     661 attctaaagt gtaataataa gacattcaat ggaacaggac catgcaataa tgtcagcaca 
     721 gtacaatgta cacatggaat taagccagtg gtatcaactc aactgctgtt aaatggtagt 
     781 ctagcagaag aagaagtagt aattagatct gaaaatatat caaataatgt caaaacaata 
     841 atagtacatc ttaatgaatc tgtaaacatt acttgtataa gacccggcaa taatacaaga 
     901 agaagtataa ggataggacc aggacaagca ttctatgcaa tgggagacat aataggaaat 
     961 ataagagaag cacattgtaa cattagtgaa aaggcatgga atgaaacttt aaaaaaggta 
    1021 gtggaaaaat tagtaaagta cttccctaat aaaacaatag aatttgcacc acccgtagga 
    1081 ggggacctag aaattacaac acatagcttt aattgtggag gagaattttt ctattgcaat 
    1141 accacaaaac tgtttaatag tacacataat agtactgata gtacagtaaa tagtactgat 
    1201 agtacagcag aaacaggaaa ttcaacaaat acaaacatca cgctcccatg cagaataagg 
    1261 caaattataa acatgtggca ggaggtagga cgagcaatgt atgctcctcc cagtaaaggg 
    1321 aacataacat gtatatcaaa catcacagga ctattactga cgcgtgatgg aggagaaaac 
    1381 aaaacagaga ataatgacac agagatattc aggcctggag gaggagatat gaaggacaat 
    1441 tggagaagtg aattatataa atataaagta gtagaaatta aaccattagg agtagcaccc 
    1501 actagagcaa aaaggagagt ggtggagaga gaaaaaagag cagtgggaat aggagctgtg 
    1561 ttccttgggt tcttgggagc agcaggaagc actatgggcg cagcatccat aacgctgacg 
    1621 gtacaagcca gacaattatt gtctggtata gtgcagcagc aaagtaattt gctgagagct 
    1681 atagaggcgc aacaacatat gttgcaactc acagtctggg gcattaagca gcttcagaca 
    1741 agagtcctgg ctatagaaag atacctaaag gatcaacagc tcctagggat ttggggatgc 
    1801 tctggaaaac tcatctgcac cactaatgtg ccttggaact ctagttggag taacaaatct 
    1861 tatggggaca tttgggataa catgacctgg atgcagtggg atagagaaat taataactac 
    1921 acaaacacaa tatacaggtt gcttgaagac tcgcaaaacc agcaggaaaa aaatgaacaa 
    1981 gatttattag cattggacaa atggcaaagt ctgtggtcgt ggtttagtat atcaagctgg 
    2041 ctatggtata taaaaatatt cataatggta gtaggaggat tgataggttt aagaataatt 
    2101 tttgctgtgc tttctatagt gaatagagtt aggcagggat actcaccctt atcgttgcag 
    2161 accctccccc caaacccgag ggaactcgac aggctcggag gaatcgaaga agaaggtgga 
    2221 gagcaagaca gaggcagatc tgtgagatta gtgagcggat tcttaccact tgcctgggac 
    2281 gatctgagga gcctgtgcct cttctgctac caccgattga gagacttact attgatcaca 
    2341 acgagagcgg tggaacttct ggcacgcagc attctcaagg gactacagag ggggtgggaa 
    2401 atccttaaat atctgggaag tcttgtgcag tattggggtc aggagctaaa aaagagtgct 
    2461 attaatctgc ttgataccac agcaatagca gtagctgaag caacagatag aattttagaa 
    2521 ttactacaaa ggatttggag aggtatctgc aacgtaccta caagaataag acagggcttt 
    2581 gaagcagctt tgcaataa
//
last modified: Tue May 31 10:56 2022


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