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LOCUS FJ443188 2598 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate CHV0004193 from South Africa envelope glycoprotein
(env) pseudogene, complete sequence
ACCESSION FJ443188
VERSION FJ443188.1 GI:226968931
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2598)
Show all sequences for reference 1
AUTHORS Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
Korber,B.T., Swanstrom,R. and Williamson,C.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Quantitating the multiplicity of infection with human
immunodeficiency virus type 1 subtype C reveals a non-poisson
distribution of transmitted variants
JOURNAL J. Virol. 83 (8), 3556-3567 (2009)
PUBMED 19193811
REFERENCE 2 (bases 1 to 2598)
Show all sequences for reference 2
AUTHORS Hraber,P.T.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## HLA type A6802 A6802 B1510 B1510 C304
C304 Sequence Name CHV0004193 Patient code CAP210 Isolate name
CAP210.1.00TA2 Subtype C Patient cohort CHAVI001 CD4 count 332
Sample date Jan 1 2005 Sample tissue plasma Amplification strategy
SGA Risk Factor SG Patient age 43 Patient sex F Fiebig Stage 1 or 2
Viral Load 468000 Sample city Durban DBID 2280556746
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2598
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CHV0004193"
/db_xref="taxon:11676"
/country="South Africa"
/note="subtype: C"
gene 1..2598
/gene="env"
/note="envelope glycoprotein"
/pseudo="envelope glycoprotein"
BASE COUNT 928 a 430 c 608 g 632 t
ORIGIN
1 atgagagtga tggggataca gaggaattgg cagcaatggg ggatatgggg catcttaggc
61 ttttggctgt taatgatctg tagtgggatg ggaaacttgt gggtcacagt atattatggg
121 gtacctgtgt ggaaagaggc aaaaaccacc ttattttgtg catcagacgc taaaggatat
181 gacacagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatag ttttggaaaa tgtaacagaa aactttaaca tgtggaaaaa tgacatggtg
301 gatcagatgc atcaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag
361 ttaaccccac tctgtgttac tttaacttgt agcgatgcta catataataa tggtacgaat
421 agtactgata ctatgaaaat ttgttctttc aatgcaacca cagaactaag agataagaaa
481 aagaaggagt atgcactttt ttatagactt gatatagtac cacttaagaa tgaaagtgag
541 agtcagaatt ttagtgagta tatattaata aactgtaata cctcaaccat agcacaagcc
601 tgtccaaagg tctcttttga cccaattcct atacattatt gtgctccagc gggttatgcg
661 attctaaagt gtaataataa gacattcaat ggaacaggac catgcaataa tgtcagcaca
721 gtacaatgta cacatggaat taagccagtg gtatcaactc aactgctgtt aaatggtagt
781 ctagcagaag aagaagtagt aattagatct gaaaatatat caaataatgt caaaacaata
841 atagtacatc ttaatgaatc tgtaaacatt acttgtataa gacccggcaa taatacaaga
901 agaagtataa ggataggacc aggacaagca ttctatgcaa tgggagacat aataggaaat
961 ataagagaag cacattgtaa cattagtgaa aaggcatgga atgaaacttt aaaaaaggta
1021 gtggaaaaat tagtaaagta cttccctaat aaaacaatag aatttgcacc acccgtagga
1081 ggggacctag aaattacaac acatagcttt aattgtggag gagaattttt ctattgcaat
1141 accacaaaac tgtttaatag tacacataat agtactgata gtacagtaaa tagtactgat
1201 agtacagcag aaacaggaaa ttcaacaaat acaaacatca cgctcccatg cagaataagg
1261 caaattataa acatgtggca ggaggtagga cgagcaatgt atgctcctcc cagtaaaggg
1321 aacataacat gtatatcaaa catcacagga ctattactga cgcgtgatgg aggagaaaac
1381 aaaacagaga ataatgacac agagatattc aggcctggag gaggagatat gaaggacaat
1441 tggagaagtg aattatataa atataaagta gtagaaatta aaccattagg agtagcaccc
1501 actagagcaa aaaggagagt ggtggagaga gaaaaaagag cagtgggaat aggagctgtg
1561 ttccttgggt tcttgggagc agcaggaagc actatgggcg cagcatccat aacgctgacg
1621 gtacaagcca gacaattatt gtctggtata gtgcagcagc aaagtaattt gctgagagct
1681 atagaggcgc aacaacatat gttgcaactc acagtctggg gcattaagca gcttcagaca
1741 agagtcctgg ctatagaaag atacctaaag gatcaacagc tcctagggat ttggggatgc
1801 tctggaaaac tcatctgcac cactaatgtg ccttggaact ctagttggag taacaaatct
1861 tatggggaca tttgggataa catgacctgg atgcagtggg atagagaaat taataactac
1921 acaaacacaa tatacaggtt gcttgaagac tcgcaaaacc agcaggaaaa aaatgaacaa
1981 gatttattag cattggacaa atggcaaagt ctgtggtcgt ggtttagtat atcaagctgg
2041 ctatggtata taaaaatatt cataatggta gtaggaggat tgataggttt aagaataatt
2101 tttgctgtgc tttctatagt gaatagagtt aggcagggat actcaccctt atcgttgcag
2161 accctccccc caaacccgag ggaactcgac aggctcggag gaatcgaaga agaaggtgga
2221 gagcaagaca gaggcagatc tgtgagatta gtgagcggat tcttaccact tgcctgggac
2281 gatctgagga gcctgtgcct cttctgctac caccgattga gagacttact attgatcaca
2341 acgagagcgg tggaacttct ggcacgcagc attctcaagg gactacagag ggggtgggaa
2401 atccttaaat atctgggaag tcttgtgcag tattggggtc aggagctaaa aaagagtgct
2461 attaatctgc ttgataccac agcaatagca gtagctgaag caacagatag aattttagaa
2521 ttactacaaa ggatttggag aggtatctgc aacgtaccta caagaataag acagggcttt
2581 gaagcagctt tgcaataa
//
last modified: Tue May 31 10:56 2022