HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ443167		    2538 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate CHV0004172 from South Africa envelope glycoprotein
	    (env) pseudogene, complete sequence
ACCESSION   FJ443167
VERSION     FJ443167.1 GI:226968850
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2538)
            Show all sequences for reference 1
  AUTHORS   Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
	    Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
	    Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
	    Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
	    Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
	    Korber,B.T., Swanstrom,R. and Williamson,C.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Quantitating the multiplicity of infection with human
	    immunodeficiency virus type 1 subtype C reveals a non-poisson
	    distribution of transmitted variants
  JOURNAL   J. Virol. 83 (8), 3556-3567 (2009)
  PUBMED    19193811
REFERENCE   2 (bases 1 to 2538)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.T.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## HLA type A2902 A7401 B1503 B4407 C210
	    C701 Sequence Name CHV0004172 Patient code CAP84 Isolate name
	    CAP84.1.00G10 Subtype C Patient cohort CHAVI001 CD4 count 542
	    Sample date Jan 1 2005 Sample tissue plasma Amplification strategy
	    SGA Risk Factor SG Patient age 18 Patient sex F Fiebig Stage 5
	    Viral Load 559000 Sample city Durban DBID 274545353
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2538
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CHV0004172"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="subtype: C"
     gene	     1..2538
		     /gene="env"
		     /note="envelope glycoprotein"
		     /pseudo="envelope glycoprotein"
BASE COUNT	908 a	 424 c	  592 g    614 t
ORIGIN
       1 atgagagtga gggggataca gaggaattgg ccacaatggt ggatatgggg catgttaggc 
      61 ttttggatga taataatgtg tagggtaatg gggaacttgt gggtcacagt ctattatggg 
     121 gtaccggtgt ggacagatgc aaaaactact ctattctgtg catcagatgc taaagcatat 
     181 gagagagagg tgcataatgt ttgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatag ttttgggaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atgaagatat aattagttta tgggatcaaa gtctaaaacc atgtgtaaag 
     361 ttgaccccac tctgtgtcac tttaaagtgc acaaatgcta cctataataa tagcaatgga 
     421 gaagtaaaaa attgcacttt caatacaacc acagaaataa gggataggaa acagaatgcg 
     481 tttgcacttt tttatagatc tgatgtagta ccaattaagg agaataacaa gaatggctct 
     541 gaagagaata gctatatatt aataaattgc aatacctcaa ccataacaca ggcttgtcca 
     601 aaggtctctt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta 
     661 aagtgtaata ataagacatt cagtgggaca ggaccatgtc ttaatgtcag cacagtacaa 
     721 tgtacacatg ggattaaacc agtggtatca acccaactgc tgttaaatgg tagcctagca 
     781 gaagaggaga taataattag atctgaaaat ctgacaaaca atgtcaaaac aataatagta 
     841 catcttaatg aatctataca aattgtgtgt acaagaccca acaataatac aaggaaaagt 
     901 ataaggatag gaccaggaca aacgttcttt gcaacaaatg aaataatagg aaacataaga 
     961 caagcacatt gtaacattag taaaacagac tgggaaaaaa ctttagaaaa ggtaaaggaa 
    1021 aaattaaagg aacactataa taaaacaata gaatttaaac aaccagtctc aggaggggat 
    1081 ctagaagtta caacacatag ctttaattgt agaggagaat ttttctattg caatacaaca 
    1141 aatctgttca atctgaacag tactgatgga agtaacatca ctaacatcac aatcccatgc 
    1201 agaataaaac aaattataaa catgtggcag aaggtaggac gagcaatgta tgcccctcct 
    1261 attgaaggaa taataacatg taactcaagt atcacaggac tactgctgac acgtgatgga 
    1321 ggtggaaatg aaagtgaaac agagacattc agacctgcag gaggagatat gaaggacaat 
    1381 tggagaagtg aattatataa atataaagtg gtacaaatta agccattagg aatagcaccc 
    1441 actacggcaa aaaggagagt ggtggagaga gaaaaaagag cagtgggaat aggagctgta 
    1501 ttccttgggt tcttgggagc agcaggaagc actatgggcg cggcgtcaat aacgctgacg 
    1561 gtacaggcca gacaactgtt gtctggtata gtgcaacagc aaagcaattt gctgagagct 
    1621 atagaggcgc aacagcatat gttgcaactc acggtctggg gcattaaaca gctccagaca 
    1681 agagtcttgg ctatagaaag atacctaaag gatcaacagc tcctaggact ttggggctgc 
    1741 tctggaaaac tcatctgcac cactactgtg ccttggaact ccagttggag taataaatct 
    1801 cactcagata tttgggataa catgacctgg atgcagtggg atagagaaat taataattac 
    1861 acaaacacaa tatacaggtt gcttgaagaa tcgcaaaccc aacaggagaa aaatgaaaaa 
    1921 gatttattag cattggacag ttggaatagc ctgtggaatt ggtttagcat aacaaagtgg 
    1981 ctgtggtata taaaaatatt catcatgata gtaggaggct tgataggttt aagaataatt 
    2041 tttggtgtgc tttctatagt gaaaagagtt aggcagggat actcaccttt gtcgtttcag 
    2101 acccttatcc caaacccgag gggactcgac aggctcggaa gaatcgaaga agaaggtgga 
    2161 gagcaagaca aagacagatc cattcgatta gtgaacggat tcttagcact tttctgggac 
    2221 gacctgcgga gcctgtgcct cttctgctac caccaattga gagacttcat attgattgta 
    2281 gcgagagcag tgggacttct gggacacagc agtctcaggg gcctacagaa ggggtgggaa 
    2341 gcccttaaat atctgggaaa ccttgtgcta tatggaggtc aggagctaaa aaggagagct 
    2401 attcgtctgc ttgatagttt agcaataaca gtagctgaag gaacagatag gattattgaa 
    2461 gtagcacaaa gaatctgtag agctatccgc aatataccta gaagaataag acagggcttt 
    2521 gaagcagctt tgctataa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health