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LOCUS FJ443167 2538 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate CHV0004172 from South Africa envelope glycoprotein
(env) pseudogene, complete sequence
ACCESSION FJ443167
VERSION FJ443167.1 GI:226968850
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2538)
Show all sequences for reference 1
AUTHORS Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
Korber,B.T., Swanstrom,R. and Williamson,C.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Quantitating the multiplicity of infection with human
immunodeficiency virus type 1 subtype C reveals a non-poisson
distribution of transmitted variants
JOURNAL J. Virol. 83 (8), 3556-3567 (2009)
PUBMED 19193811
REFERENCE 2 (bases 1 to 2538)
Show all sequences for reference 2
AUTHORS Hraber,P.T.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## HLA type A2902 A7401 B1503 B4407 C210
C701 Sequence Name CHV0004172 Patient code CAP84 Isolate name
CAP84.1.00G10 Subtype C Patient cohort CHAVI001 CD4 count 542
Sample date Jan 1 2005 Sample tissue plasma Amplification strategy
SGA Risk Factor SG Patient age 18 Patient sex F Fiebig Stage 5
Viral Load 559000 Sample city Durban DBID 274545353
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2538
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CHV0004172"
/db_xref="taxon:11676"
/country="South Africa"
/note="subtype: C"
gene 1..2538
/gene="env"
/note="envelope glycoprotein"
/pseudo="envelope glycoprotein"
BASE COUNT 908 a 424 c 592 g 614 t
ORIGIN
1 atgagagtga gggggataca gaggaattgg ccacaatggt ggatatgggg catgttaggc
61 ttttggatga taataatgtg tagggtaatg gggaacttgt gggtcacagt ctattatggg
121 gtaccggtgt ggacagatgc aaaaactact ctattctgtg catcagatgc taaagcatat
181 gagagagagg tgcataatgt ttgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatag ttttgggaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg
301 gatcagatgc atgaagatat aattagttta tgggatcaaa gtctaaaacc atgtgtaaag
361 ttgaccccac tctgtgtcac tttaaagtgc acaaatgcta cctataataa tagcaatgga
421 gaagtaaaaa attgcacttt caatacaacc acagaaataa gggataggaa acagaatgcg
481 tttgcacttt tttatagatc tgatgtagta ccaattaagg agaataacaa gaatggctct
541 gaagagaata gctatatatt aataaattgc aatacctcaa ccataacaca ggcttgtcca
601 aaggtctctt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta
661 aagtgtaata ataagacatt cagtgggaca ggaccatgtc ttaatgtcag cacagtacaa
721 tgtacacatg ggattaaacc agtggtatca acccaactgc tgttaaatgg tagcctagca
781 gaagaggaga taataattag atctgaaaat ctgacaaaca atgtcaaaac aataatagta
841 catcttaatg aatctataca aattgtgtgt acaagaccca acaataatac aaggaaaagt
901 ataaggatag gaccaggaca aacgttcttt gcaacaaatg aaataatagg aaacataaga
961 caagcacatt gtaacattag taaaacagac tgggaaaaaa ctttagaaaa ggtaaaggaa
1021 aaattaaagg aacactataa taaaacaata gaatttaaac aaccagtctc aggaggggat
1081 ctagaagtta caacacatag ctttaattgt agaggagaat ttttctattg caatacaaca
1141 aatctgttca atctgaacag tactgatgga agtaacatca ctaacatcac aatcccatgc
1201 agaataaaac aaattataaa catgtggcag aaggtaggac gagcaatgta tgcccctcct
1261 attgaaggaa taataacatg taactcaagt atcacaggac tactgctgac acgtgatgga
1321 ggtggaaatg aaagtgaaac agagacattc agacctgcag gaggagatat gaaggacaat
1381 tggagaagtg aattatataa atataaagtg gtacaaatta agccattagg aatagcaccc
1441 actacggcaa aaaggagagt ggtggagaga gaaaaaagag cagtgggaat aggagctgta
1501 ttccttgggt tcttgggagc agcaggaagc actatgggcg cggcgtcaat aacgctgacg
1561 gtacaggcca gacaactgtt gtctggtata gtgcaacagc aaagcaattt gctgagagct
1621 atagaggcgc aacagcatat gttgcaactc acggtctggg gcattaaaca gctccagaca
1681 agagtcttgg ctatagaaag atacctaaag gatcaacagc tcctaggact ttggggctgc
1741 tctggaaaac tcatctgcac cactactgtg ccttggaact ccagttggag taataaatct
1801 cactcagata tttgggataa catgacctgg atgcagtggg atagagaaat taataattac
1861 acaaacacaa tatacaggtt gcttgaagaa tcgcaaaccc aacaggagaa aaatgaaaaa
1921 gatttattag cattggacag ttggaatagc ctgtggaatt ggtttagcat aacaaagtgg
1981 ctgtggtata taaaaatatt catcatgata gtaggaggct tgataggttt aagaataatt
2041 tttggtgtgc tttctatagt gaaaagagtt aggcagggat actcaccttt gtcgtttcag
2101 acccttatcc caaacccgag gggactcgac aggctcggaa gaatcgaaga agaaggtgga
2161 gagcaagaca aagacagatc cattcgatta gtgaacggat tcttagcact tttctgggac
2221 gacctgcgga gcctgtgcct cttctgctac caccaattga gagacttcat attgattgta
2281 gcgagagcag tgggacttct gggacacagc agtctcaggg gcctacagaa ggggtgggaa
2341 gcccttaaat atctgggaaa ccttgtgcta tatggaggtc aggagctaaa aaggagagct
2401 attcgtctgc ttgatagttt agcaataaca gtagctgaag gaacagatag gattattgaa
2461 gtagcacaaa gaatctgtag agctatccgc aatataccta gaagaataag acagggcttt
2521 gaagcagctt tgctataa
//
last modified: Tue May 31 10:56 2022