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LOCUS FJ443163 2523 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate CHV0004168 from South Africa envelope glycoprotein
(env) pseudogene, complete sequence
ACCESSION FJ443163
VERSION FJ443163.1 GI:226968837
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2523)
Show all sequences for reference 1
AUTHORS Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
Korber,B.T., Swanstrom,R. and Williamson,C.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Quantitating the multiplicity of infection with human
immunodeficiency virus type 1 subtype C reveals a non-poisson
distribution of transmitted variants
JOURNAL J. Virol. 83 (8), 3556-3567 (2009)
PUBMED 19193811
REFERENCE 2 (bases 1 to 2523)
Show all sequences for reference 2
AUTHORS Hraber,P.T.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name CHV0004168 Patient code
CAP37 Isolate name CAP37.1.18C8 Subtype C Patient cohort CHAVI001
Sample date Jan 1 2006 Sample tissue plasma Amplification strategy
SGA Risk Factor SG Patient age 20 Patient sex F Fiebig Stage 4
Viral Load 248000 Sample city Durban DBID 4244277067
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2523
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CHV0004168"
/db_xref="taxon:11676"
/country="South Africa"
/note="subtype: C"
gene 1..2523
/gene="env"
/note="envelope glycoprotein"
/pseudo="envelope glycoprotein"
BASE COUNT 903 a 430 c 579 g 611 t
ORIGIN
1 atgagagtga gggggacact gaggaattat ctaccttggt ggatatgggg aatcttaggc
61 ttttggataa tgagttataa tgtgggggga aacttgtggg tcacagtcta ttatggggta
121 cctgtgtgga gagaagcaaa aactactctg ttctgtgcat cagatgctaa agcatatgac
181 aaagaagtgc acaatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa
241 gaaatggttt tgggaaatgt aacagaaaat tttaacatgt ggaaaaatga catggtggat
301 cagatgcatg aggatataat cagtttatgg gatcaaagtc taaagccatg tgtaaagttg
361 accccactct gtgtcacttt aaattgtact gaggtagcta aggctactgg caatttcacg
421 ggagtagaaa tgaaaaattg ctctttcaat acaaccacag aattaagaga caggacacgg
481 aaagcatatg cactctttta tagacaggat atagtaccac ttgaagagaa taagaatagc
541 tctgagtata tattaataaa ttgcaatacc tcaaccataa cacaagcctg tccaaaggtc
601 acctttgacc caattcctat acattattgt gctccagctg gttatgcgat tctaaaatgt
661 aataatcaga cattcaatgg gacaggacca tgccttaatg ttagtacagt acaatgtaca
721 catggaatta agccagtggt atcaactcaa ctactgttaa atggtagcat agcaggaaaa
781 gagatagtaa ttagatctgc aaatctgtca gacaatgcca aaacaataat agtacatctt
841 aatgaatctg tagaaattca gtgtataaga cctaacaata atacaaggaa aagtataagg
901 atagggccag gacaaacatt ctatgcaaaa aatgacataa taggagacat aagacaagca
961 cattgtaaca ttagtaaaac aaaatggaat ggaactttag aaagggtaaa ggagaaatta
1021 aaagtacact tccctaataa aacaatacaa tttaaaccat cctcaggagg ggacctagaa
1081 attacaacac atagctttaa ttgtagagga gaattttttt attgcaatac atcaggctta
1141 tttaatagta atagtacata cttaaattca acaaaaaata attcaacaga catcacaatt
1201 acactcccat gcagaataaa acaaattata aacatgtggc agggggtagg acgagcaatg
1261 tatgcccctc ccattgaagg aaacataaca tgtacctcaa gtatcacagg actactattg
1321 acacgggatg gaggtaagaa caacacagaa aataatacag agatattcag gcctggagga
1381 ggaaatatga aggacaattg gagaagtgaa ttatataaat ataaagtggt agaaattaaa
1441 ccattaggaa tagcacccac taaagcaaaa aggagagtgg tggagagaga aaaaagagca
1501 gtgggaatag gagctgtgtt ccttgggttc ttgggagcag caggaagcac tatgggcgcg
1561 gcgtcaataa cgctgacggt acaggccaga caactgttgt ctggtatagt gcaacagcaa
1621 agcaatttgc tgagagctat agaggcgcaa cagcatatgt tgcaactcac ggtctggggc
1681 attaagcagc tccaagcaag agtcctggct atagaaagat acctaaagga tcaacagctc
1741 ctaggaattt ggggctgctc tggaaaactc atctgcacca ctgctgtacc ttggaactcc
1801 agttggagta ataaatctct agatgatatt tgggaaaaca tgacctggat gcagtgggac
1861 aaagaaatta gtaattactc aaacacaata tacaagttgc ttgaagcatc gcaaacccag
1921 caggagcaaa atgaaaagga tttattagca ttggacaagt ggcaaaatct gtggagttgg
1981 tttagcataa caaattggct atggtatata aaaatattca taatgatagt aggaggcttg
2041 ataggtttaa gaataatttt tgctgtgcta tctatagtaa atagagttag gcagggatac
2101 tcacctttgt cgtttcagac ccttatccca gacccgaggg gacccgacag gcccggagga
2161 atcgaagaag aaggtggaga gcaagacaga aacagatcag tgagattagt gaacggattc
2221 ttagcacttg tctgggacga cctgcggagc ctgtgcctct tcagctacca ccgattgaga
2281 gactgcatat tgggactgaa acttctggga cagaggggat gggaagccct taagtatcta
2341 ggaagtcttg tgcagtattg gggtctggaa ctaaaaaaga gtgccattag tctgcttgat
2401 accatagcaa tagtagtagc tgagggaaca gatagaatta tagaattcat actaagaatt
2461 tgtagagcta tccaccacat acctagaaga gtaagacagg gctttgaagc agctttgcta
2521 taa
//
last modified: Tue May 31 10:56 2022