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LOCUS	    FJ443163		    2523 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate CHV0004168 from South Africa envelope glycoprotein
	    (env) pseudogene, complete sequence
ACCESSION   FJ443163
VERSION     FJ443163.1 GI:226968837
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2523)
            Show all sequences for reference 1
  AUTHORS   Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
	    Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
	    Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
	    Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
	    Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
	    Korber,B.T., Swanstrom,R. and Williamson,C.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Quantitating the multiplicity of infection with human
	    immunodeficiency virus type 1 subtype C reveals a non-poisson
	    distribution of transmitted variants
  JOURNAL   J. Virol. 83 (8), 3556-3567 (2009)
  PUBMED    19193811
REFERENCE   2 (bases 1 to 2523)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.T.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name CHV0004168 Patient code
	    CAP37 Isolate name CAP37.1.18C8 Subtype C Patient cohort CHAVI001
	    Sample date Jan 1 2006 Sample tissue plasma Amplification strategy
	    SGA Risk Factor SG Patient age 20 Patient sex F Fiebig Stage 4
	    Viral Load 248000 Sample city Durban DBID 4244277067
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2523
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CHV0004168"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="subtype: C"
     gene	     1..2523
		     /gene="env"
		     /note="envelope glycoprotein"
		     /pseudo="envelope glycoprotein"
BASE COUNT	903 a	 430 c	  579 g    611 t
ORIGIN
       1 atgagagtga gggggacact gaggaattat ctaccttggt ggatatgggg aatcttaggc 
      61 ttttggataa tgagttataa tgtgggggga aacttgtggg tcacagtcta ttatggggta 
     121 cctgtgtgga gagaagcaaa aactactctg ttctgtgcat cagatgctaa agcatatgac 
     181 aaagaagtgc acaatgtctg ggctacacat gcctgtgtac ccacagaccc caacccacaa 
     241 gaaatggttt tgggaaatgt aacagaaaat tttaacatgt ggaaaaatga catggtggat 
     301 cagatgcatg aggatataat cagtttatgg gatcaaagtc taaagccatg tgtaaagttg 
     361 accccactct gtgtcacttt aaattgtact gaggtagcta aggctactgg caatttcacg 
     421 ggagtagaaa tgaaaaattg ctctttcaat acaaccacag aattaagaga caggacacgg 
     481 aaagcatatg cactctttta tagacaggat atagtaccac ttgaagagaa taagaatagc 
     541 tctgagtata tattaataaa ttgcaatacc tcaaccataa cacaagcctg tccaaaggtc 
     601 acctttgacc caattcctat acattattgt gctccagctg gttatgcgat tctaaaatgt 
     661 aataatcaga cattcaatgg gacaggacca tgccttaatg ttagtacagt acaatgtaca 
     721 catggaatta agccagtggt atcaactcaa ctactgttaa atggtagcat agcaggaaaa 
     781 gagatagtaa ttagatctgc aaatctgtca gacaatgcca aaacaataat agtacatctt 
     841 aatgaatctg tagaaattca gtgtataaga cctaacaata atacaaggaa aagtataagg 
     901 atagggccag gacaaacatt ctatgcaaaa aatgacataa taggagacat aagacaagca 
     961 cattgtaaca ttagtaaaac aaaatggaat ggaactttag aaagggtaaa ggagaaatta 
    1021 aaagtacact tccctaataa aacaatacaa tttaaaccat cctcaggagg ggacctagaa 
    1081 attacaacac atagctttaa ttgtagagga gaattttttt attgcaatac atcaggctta 
    1141 tttaatagta atagtacata cttaaattca acaaaaaata attcaacaga catcacaatt 
    1201 acactcccat gcagaataaa acaaattata aacatgtggc agggggtagg acgagcaatg 
    1261 tatgcccctc ccattgaagg aaacataaca tgtacctcaa gtatcacagg actactattg 
    1321 acacgggatg gaggtaagaa caacacagaa aataatacag agatattcag gcctggagga 
    1381 ggaaatatga aggacaattg gagaagtgaa ttatataaat ataaagtggt agaaattaaa 
    1441 ccattaggaa tagcacccac taaagcaaaa aggagagtgg tggagagaga aaaaagagca 
    1501 gtgggaatag gagctgtgtt ccttgggttc ttgggagcag caggaagcac tatgggcgcg 
    1561 gcgtcaataa cgctgacggt acaggccaga caactgttgt ctggtatagt gcaacagcaa 
    1621 agcaatttgc tgagagctat agaggcgcaa cagcatatgt tgcaactcac ggtctggggc 
    1681 attaagcagc tccaagcaag agtcctggct atagaaagat acctaaagga tcaacagctc 
    1741 ctaggaattt ggggctgctc tggaaaactc atctgcacca ctgctgtacc ttggaactcc 
    1801 agttggagta ataaatctct agatgatatt tgggaaaaca tgacctggat gcagtgggac 
    1861 aaagaaatta gtaattactc aaacacaata tacaagttgc ttgaagcatc gcaaacccag 
    1921 caggagcaaa atgaaaagga tttattagca ttggacaagt ggcaaaatct gtggagttgg 
    1981 tttagcataa caaattggct atggtatata aaaatattca taatgatagt aggaggcttg 
    2041 ataggtttaa gaataatttt tgctgtgcta tctatagtaa atagagttag gcagggatac 
    2101 tcacctttgt cgtttcagac ccttatccca gacccgaggg gacccgacag gcccggagga 
    2161 atcgaagaag aaggtggaga gcaagacaga aacagatcag tgagattagt gaacggattc 
    2221 ttagcacttg tctgggacga cctgcggagc ctgtgcctct tcagctacca ccgattgaga 
    2281 gactgcatat tgggactgaa acttctggga cagaggggat gggaagccct taagtatcta 
    2341 ggaagtcttg tgcagtattg gggtctggaa ctaaaaaaga gtgccattag tctgcttgat 
    2401 accatagcaa tagtagtagc tgagggaaca gatagaatta tagaattcat actaagaatt 
    2461 tgtagagcta tccaccacat acctagaaga gtaagacagg gctttgaagc agctttgcta 
    2521 taa
//
last modified: Tue May 31 10:56 2022


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