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LOCUS	    FJ443146		    2562 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate CHV0003356 from South Africa envelope glycoprotein
	    (env) pseudogene, complete sequence
ACCESSION   FJ443146
VERSION     FJ443146.1 GI:226968773
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2562)
            Show all sequences for reference 1
  AUTHORS   Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
	    Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
	    Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
	    Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
	    Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
	    Korber,B.T., Swanstrom,R. and Williamson,C.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Quantitating the multiplicity of infection with human
	    immunodeficiency virus type 1 subtype C reveals a non-poisson
	    distribution of transmitted variants
  JOURNAL   J. Virol. 83 (8), 3556-3567 (2009)
  PUBMED    19193811
REFERENCE   2 (bases 1 to 2562)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.T.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name CHV0003356 Patient code
	    CAP239 Isolate name CAP239.2.00E7 Subtype C Patient cohort CHAVI001
	    CD4 count 845 Sample date Aug 10 2005 Sample tissue plasma
	    Amplification strategy SGA Risk Factor SG Patient age 44 Patient
	    sex F Fiebig Stage 5 Viral Load 95800 Sample city Durban DBID
	    2442602914 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2562
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CHV0003356"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="subtype: C"
     gene	     1..2562
		     /gene="env"
		     /note="envelope glycoprotein"
		     /pseudo="envelope glycoprotein"
BASE COUNT	910 a	 423 c	  596 g    633 t
ORIGIN
       1 atgagagtga gggggacaca gaggaattat ccacaatggt ggatatgggg catcttaggc 
      61 ttttggatgt taatgatttg taatacaagg ggcttgtggg tcacagtcta ttatggggta 
     121 ccagtatgga aagatgcaaa agctacttta ttctgtgcat cagatgctaa agcatatgat 
     181 agagaagtgc ataatgtttg ggctacacat gcctgtgtac ccacagatcc caatccacaa 
     241 gaaatgatgt tgggaaatgt aacagagaaa tttaacatgt ggaaaaatga catggtggac 
     301 cagatgcata aagatataat cagtttatgg gatcaaagcc tcaagccatg tgtaaagttg 
     361 accccactct gtgtcacttt aaactgtagt acaaatatta caaaggctaa tgttacaagt 
     421 gaagaaatga gaagttgctc tttcaatata accacagaat taagagataa gaaacagaaa 
     481 gtaaatgcac ttttttataa acttgatata gtaccaatta atgagagttc tagttctagt 
     541 gagtatagat tgataaattg taatacctca gtcataacac aagcctgtcc aaaggtaact 
     601 tttgatccaa ttcctataca ttattgtgct ccagctggtt atgcgattct aaagtgtaat 
     661 aataagacat tcaatggagc aggaccatgc actaatgtca gcacagtaca atgtacacat 
     721 ggaattaagc cagtggtatc aactcaacta ctgttaaatg gtagcctagc agaagaggat 
     781 ataataatta gatctcaaaa tatattagac aataccaaaa caataatagt acatctcaag 
     841 gaagctgtag agattaactg tacaagaccc aacaataata caaggaaaag tataagaata 
     901 ggaccaggac aagcattcta tgcaacagga gacataatag gaaatataag acaagcacat 
     961 tgtaacatca gtgaaagaaa atggaatgaa actttacaaa gggtaggtga caaattaaga 
    1021 aaacacttcc ttaataaaac aataatattt gcaccagcct caggagggga cctagagatt 
    1081 acaacacata tctttaattg tagaggagaa tttttctatt gcaatacatc aggcctgttt 
    1141 aatggtacat ttaatggtac atatacaaat agtacaaata gtacttcaaa tgcaaccatc 
    1201 acactcccat gtaaaataaa acaaattata aacatgtggc aggaggtagg aagagcaatg 
    1261 tatgcccctc ccattgcagg aaacataaca tgtaaatcaa atatcacagg attgctcttg 
    1321 acatgggatg gtggagacag taaggagaat aagacaaggc ataatgagac attcagacct 
    1381 ggaggaggag atatgagaga taattggaga agtgaattat ataaatataa agtggtagaa 
    1441 attaagccat taggagtagc acccactgat gcaaaaagga gagtggtgga gagagagaaa 
    1501 agagcagtgg gactaggagc tgtgttcctt gggttcttgg gagcggcagg aagcactatg 
    1561 ggcgcggcgt caataacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa 
    1621 cagcaaagca atttgctgag ggctatagag gcgcaacagc atatgttgca actcacagtc 
    1681 tggggcatta agcagctcca ggcaagagtc ctggccatag aaagatacct aaaggatcaa 
    1741 cagctcctag gaatgtgggg ctgctctgga aaactcatct gcaccactgc tgtgtcttgg 
    1801 aacactagtt ggagtaataa aactcaagcg gagatttggg ataacatgac ctggatggag 
    1861 tgggatagag aaattagtaa ttacacaaac acaatatacc agttgcttga agaatctcaa 
    1921 aaccagcagg aaaaaaatga aaaggattta ctagcattgg acagttggaa cagtctgtgg 
    1981 aattggttta gcataacaaa ctggctgtgg tatataaaaa tattcataat gatagtagga 
    2041 ggtttgatag gtttaagaat aatttttgct gtgctttcta taatgaatag ggttaggcag 
    2101 ggatactcac ctttgtcatt tcagatcctt accccaaacc cgaggggacc cgacaggctc 
    2161 ggaagaatcg aagaagaagg tggagagcaa gacagagaca gatccattcg attagtgaac 
    2221 ggattcttag cgcttgcctg ggacgacctg cggagcctgt gccttttcag ctaccaccaa 
    2281 ttgagagact tcatattgat tgcagtgaga gcagtggaac ttctgggacg cagccttctc 
    2341 aggggactac agagggggtg ggaaatcctt aagtatctgg gaaatcttgt gcaatattgg 
    2401 ggatcagagc taaaaaagag tgctattcat ctgcttgata ccatagcaat agcagtagct 
    2461 ggaggaacag ataggattat agacttacta ctaagaattt gtagagctat ctacagcata 
    2521 cctagaagaa taagacaggg ctttgaagca gctttgcaat aa
//
last modified: Tue May 31 10:56 2022


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