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LOCUS FJ443146 2562 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate CHV0003356 from South Africa envelope glycoprotein
(env) pseudogene, complete sequence
ACCESSION FJ443146
VERSION FJ443146.1 GI:226968773
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2562)
Show all sequences for reference 1
AUTHORS Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
Korber,B.T., Swanstrom,R. and Williamson,C.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Quantitating the multiplicity of infection with human
immunodeficiency virus type 1 subtype C reveals a non-poisson
distribution of transmitted variants
JOURNAL J. Virol. 83 (8), 3556-3567 (2009)
PUBMED 19193811
REFERENCE 2 (bases 1 to 2562)
Show all sequences for reference 2
AUTHORS Hraber,P.T.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name CHV0003356 Patient code
CAP239 Isolate name CAP239.2.00E7 Subtype C Patient cohort CHAVI001
CD4 count 845 Sample date Aug 10 2005 Sample tissue plasma
Amplification strategy SGA Risk Factor SG Patient age 44 Patient
sex F Fiebig Stage 5 Viral Load 95800 Sample city Durban DBID
2442602914 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2562
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CHV0003356"
/db_xref="taxon:11676"
/country="South Africa"
/note="subtype: C"
gene 1..2562
/gene="env"
/note="envelope glycoprotein"
/pseudo="envelope glycoprotein"
BASE COUNT 910 a 423 c 596 g 633 t
ORIGIN
1 atgagagtga gggggacaca gaggaattat ccacaatggt ggatatgggg catcttaggc
61 ttttggatgt taatgatttg taatacaagg ggcttgtggg tcacagtcta ttatggggta
121 ccagtatgga aagatgcaaa agctacttta ttctgtgcat cagatgctaa agcatatgat
181 agagaagtgc ataatgtttg ggctacacat gcctgtgtac ccacagatcc caatccacaa
241 gaaatgatgt tgggaaatgt aacagagaaa tttaacatgt ggaaaaatga catggtggac
301 cagatgcata aagatataat cagtttatgg gatcaaagcc tcaagccatg tgtaaagttg
361 accccactct gtgtcacttt aaactgtagt acaaatatta caaaggctaa tgttacaagt
421 gaagaaatga gaagttgctc tttcaatata accacagaat taagagataa gaaacagaaa
481 gtaaatgcac ttttttataa acttgatata gtaccaatta atgagagttc tagttctagt
541 gagtatagat tgataaattg taatacctca gtcataacac aagcctgtcc aaaggtaact
601 tttgatccaa ttcctataca ttattgtgct ccagctggtt atgcgattct aaagtgtaat
661 aataagacat tcaatggagc aggaccatgc actaatgtca gcacagtaca atgtacacat
721 ggaattaagc cagtggtatc aactcaacta ctgttaaatg gtagcctagc agaagaggat
781 ataataatta gatctcaaaa tatattagac aataccaaaa caataatagt acatctcaag
841 gaagctgtag agattaactg tacaagaccc aacaataata caaggaaaag tataagaata
901 ggaccaggac aagcattcta tgcaacagga gacataatag gaaatataag acaagcacat
961 tgtaacatca gtgaaagaaa atggaatgaa actttacaaa gggtaggtga caaattaaga
1021 aaacacttcc ttaataaaac aataatattt gcaccagcct caggagggga cctagagatt
1081 acaacacata tctttaattg tagaggagaa tttttctatt gcaatacatc aggcctgttt
1141 aatggtacat ttaatggtac atatacaaat agtacaaata gtacttcaaa tgcaaccatc
1201 acactcccat gtaaaataaa acaaattata aacatgtggc aggaggtagg aagagcaatg
1261 tatgcccctc ccattgcagg aaacataaca tgtaaatcaa atatcacagg attgctcttg
1321 acatgggatg gtggagacag taaggagaat aagacaaggc ataatgagac attcagacct
1381 ggaggaggag atatgagaga taattggaga agtgaattat ataaatataa agtggtagaa
1441 attaagccat taggagtagc acccactgat gcaaaaagga gagtggtgga gagagagaaa
1501 agagcagtgg gactaggagc tgtgttcctt gggttcttgg gagcggcagg aagcactatg
1561 ggcgcggcgt caataacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa
1621 cagcaaagca atttgctgag ggctatagag gcgcaacagc atatgttgca actcacagtc
1681 tggggcatta agcagctcca ggcaagagtc ctggccatag aaagatacct aaaggatcaa
1741 cagctcctag gaatgtgggg ctgctctgga aaactcatct gcaccactgc tgtgtcttgg
1801 aacactagtt ggagtaataa aactcaagcg gagatttggg ataacatgac ctggatggag
1861 tgggatagag aaattagtaa ttacacaaac acaatatacc agttgcttga agaatctcaa
1921 aaccagcagg aaaaaaatga aaaggattta ctagcattgg acagttggaa cagtctgtgg
1981 aattggttta gcataacaaa ctggctgtgg tatataaaaa tattcataat gatagtagga
2041 ggtttgatag gtttaagaat aatttttgct gtgctttcta taatgaatag ggttaggcag
2101 ggatactcac ctttgtcatt tcagatcctt accccaaacc cgaggggacc cgacaggctc
2161 ggaagaatcg aagaagaagg tggagagcaa gacagagaca gatccattcg attagtgaac
2221 ggattcttag cgcttgcctg ggacgacctg cggagcctgt gccttttcag ctaccaccaa
2281 ttgagagact tcatattgat tgcagtgaga gcagtggaac ttctgggacg cagccttctc
2341 aggggactac agagggggtg ggaaatcctt aagtatctgg gaaatcttgt gcaatattgg
2401 ggatcagagc taaaaaagag tgctattcat ctgcttgata ccatagcaat agcagtagct
2461 ggaggaacag ataggattat agacttacta ctaagaattt gtagagctat ctacagcata
2521 cctagaagaa taagacaggg ctttgaagca gctttgcaat aa
//
last modified: Tue May 31 10:56 2022