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LOCUS FJ442038 897 bp DNA linear VRL 28-APR-2009
DEFINITION HIV-2 isolate 15-50 from United Kingdom integrase (pol) gene,
partial cds
ACCESSION FJ442038
VERSION FJ442038.1 GI:227430708
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 897)
Show all sequences for reference 1
AUTHORS Xu,L., Anderson,J., Garrett,N., Ferns,B., Wildfire,A., Cook,P.,
Workman,J., Graham,S. and Smit,E.
TITLE Dynamics of raltegravir resistance profile in an HIV type
2-infected patient.
JOURNAL AIDS Res. Hum. Retroviruses. 25(8); 843-7 (2009)
PUBMED 19618998
REFERENCE 2 (bases 1 to 897)
Show all sequences for reference 2
AUTHORS Xu,L., Anderson,J., Garrett,N. and Smit,E.
TITLE Direct Submission
JOURNAL Submitted (06-NOV-2008) Health Protection Agency, Heart of England
NHS Foundation Trust, Birmingham B9 5SS, U.K.
FEATURES Location/Qualifiers
source 1..897
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="15-50"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="United Kingdom"
/collection_date="20-Aug-2007"
gene <1..>897
/gene="pol"
CDS <1..>897
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACP28341.1"
/db_xref="GI:227430709"
/translation="FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQ
QKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLL
KLASRWPITHLHTDNGANFTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKN
QIDRLRDQAVSIETVVLMATHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNL
KFKTFQVYYREGRDQLWKGPGELLWKGEGAVIIKVGTEIKVVPRREVKIIRHYGGGKE
LDRSADMEDTRQAGEVAQSDQVP"
BASE COUNT 346 a 161 c 215 g 175 t
ORIGIN
1 ttcttagaaa agatagaacc agcacaggaa gagcatgaaa aatatcatgg caatgtaaaa
61 gaactagtcc ataaatttgg aatcccacaa ttagtggcaa aacagatagt aaattcctgt
121 gataaatgcc aacaaaaagg ggaagctatt catggacagg taaatgcaga actaggaaca
181 tggcagatgg actgtacaca tttagaagga aaaattataa tagtggcagt ccatgtagcc
241 agtgggttta tagaagcaga agtaatacct cagcaaacag gaagacagac agctctcttc
301 ctgttaaaac tggccagcag atggcctatc acacacctgc acacagacaa cggtgccaac
361 ttcacctcac aagacgtgaa gatggtagcc tggtgggtag gaatagagca aacctttgga
421 gtaccctata acccacaaag tcaaggagta gtggaaggaa tgcaccatca tctaaaaaat
481 caaatagaca gactcagaga tcaagcagta tcaatagaga cagttgtact aatggcaact
541 cactgcatga attttaaaag aaggggagga ataggggata tgacccctgc agaaagacta
601 gttaacatga taaccacaga gcaagaaata cagttcctcc aagcaaaaaa tttaaaattc
661 aaaactttcc aggtctatta cagagaaggc agagatcaac tctggaaggg acctggtgaa
721 ctattgtgga aaggggaagg agcagtcatc ataaaggtag ggacagaaat caaagtagta
781 cccagaagag aagtaaaaat tataaggcac tatggaggag gaaaagagtt ggatcgtagt
841 gccgacatgg aagataccag gcaggctgga gaggtggcac agtctgatca agtacct
//
last modified: Tue May 31 10:56 2022