HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ442038		     897 bp    DNA     linear	VRL 28-APR-2009
DEFINITION  HIV-2 isolate 15-50 from United Kingdom integrase (pol) gene,
	    partial cds
ACCESSION   FJ442038
VERSION     FJ442038.1 GI:227430708
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 897)
            Show all sequences for reference 1
  AUTHORS   Xu,L., Anderson,J., Garrett,N., Ferns,B., Wildfire,A., Cook,P.,
	    Workman,J., Graham,S. and Smit,E.
  TITLE     Dynamics of raltegravir resistance profile in an HIV type
	    2-infected patient.
  JOURNAL   AIDS Res. Hum. Retroviruses. 25(8); 843-7 (2009)
  PUBMED    19618998
REFERENCE   2 (bases 1 to 897)
            Show all sequences for reference 2
  AUTHORS   Xu,L., Anderson,J., Garrett,N. and Smit,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2008) Health Protection Agency, Heart of England
	    NHS Foundation Trust, Birmingham B9 5SS, U.K.
FEATURES             Location/Qualifiers
     source	     1..897
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="15-50"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="United Kingdom"
		     /collection_date="20-Aug-2007"
     gene	     <1..>897
		     /gene="pol"
     CDS	     <1..>897
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACP28341.1"
		     /db_xref="GI:227430709"
		     /translation="FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQ
		     QKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQQTGRQTALFLL
		     KLASRWPITHLHTDNGANFTSQDVKMVAWWVGIEQTFGVPYNPQSQGVVEGMHHHLKN
		     QIDRLRDQAVSIETVVLMATHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNL
		     KFKTFQVYYREGRDQLWKGPGELLWKGEGAVIIKVGTEIKVVPRREVKIIRHYGGGKE
		     LDRSADMEDTRQAGEVAQSDQVP"
BASE COUNT	346 a	 161 c	  215 g    175 t
ORIGIN
       1 ttcttagaaa agatagaacc agcacaggaa gagcatgaaa aatatcatgg caatgtaaaa 
      61 gaactagtcc ataaatttgg aatcccacaa ttagtggcaa aacagatagt aaattcctgt 
     121 gataaatgcc aacaaaaagg ggaagctatt catggacagg taaatgcaga actaggaaca 
     181 tggcagatgg actgtacaca tttagaagga aaaattataa tagtggcagt ccatgtagcc 
     241 agtgggttta tagaagcaga agtaatacct cagcaaacag gaagacagac agctctcttc 
     301 ctgttaaaac tggccagcag atggcctatc acacacctgc acacagacaa cggtgccaac 
     361 ttcacctcac aagacgtgaa gatggtagcc tggtgggtag gaatagagca aacctttgga 
     421 gtaccctata acccacaaag tcaaggagta gtggaaggaa tgcaccatca tctaaaaaat 
     481 caaatagaca gactcagaga tcaagcagta tcaatagaga cagttgtact aatggcaact 
     541 cactgcatga attttaaaag aaggggagga ataggggata tgacccctgc agaaagacta 
     601 gttaacatga taaccacaga gcaagaaata cagttcctcc aagcaaaaaa tttaaaattc 
     661 aaaactttcc aggtctatta cagagaaggc agagatcaac tctggaaggg acctggtgaa 
     721 ctattgtgga aaggggaagg agcagtcatc ataaaggtag ggacagaaat caaagtagta 
     781 cccagaagag aagtaaaaat tataaggcac tatggaggag gaaaagagtt ggatcgtagt 
     841 gccgacatgg aagataccag gcaggctgga gaggtggcac agtctgatca agtacct
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health