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LOCUS	    FJ430456		     447 bp    RNA     linear	VRL 16-DEC-2008
DEFINITION  HIV-1 isolate ES9plasma3 from USA nef protein (nef) gene, partial
	    cds
ACCESSION   FJ430456
VERSION     FJ430456.1 GI:217323187
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 447)
            Show all sequences for reference 1
  AUTHORS   Bailey,J.R., Brennan,T.P., O'Connell,K.A., Siliciano,R.F. and
	    Blankson,J.N.
  TITLE     Evidence of CD8+ T-cell-mediated selective pressure on human
	    immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors.
  JOURNAL   J. Virol.. 83(1); 88-97 (2009)
  PUBMED    18945771
REFERENCE   2 (bases 1 to 447)
            Show all sequences for reference 2
  AUTHORS   Blankson,J.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Medicine, Johns Hopkins University School
	    of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Salgado,M., Brennan,T.P., O'Conell,K.A., Bailey,J.R., Ray,S.C.,
	    Siliciano,R.F. and Blankson,J.N.
  TITLE     Evolution of the HIV-1 nef gene in HLA-B*57 Positive Elite
	    Suppressors
  JOURNAL   Retrovirology 7 (1), 94 (2010)
  PUBMED    21059238
FEATURES             Location/Qualifiers
     source	     1..447
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="ES9plasma3"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="collected 2004-2005"
     gene	     1..>447
		     /gene="nef"
     CDS	     1..>447
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACK38003.1"
		     /db_xref="GI:217323188"
		     /translation="MGSKWSKSSVVGWPGVRERMRRAEPAADGVGAVSRDLEKHGAIT
		     SSNTAATNADCAWIEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIH
		     SQRRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKQGRIL"
BASE COUNT	138 a	  84 c	  129 g     96 t
ORIGIN
       1 atgggtagta agtggtcaaa aagtagtgtg gttggatggc ctggggtaag ggaaagaatg 
      61 agacgagctg agccagcagc agatggggtg ggagcagtat ctcgagacct agaaaaacat 
     121 ggagcaatca caagtagcaa tacagcagct accaatgctg attgtgcttg gatagaagca 
     181 caagaggagg aggaggtggg ttttccagtc aggcctcaag tacctttaag accaatgact 
     241 tacaagggag ctttagatct tagccacttt ttaaaagaaa aggggggact ggaagggcta 
     301 attcactctc aaagaagaca agatatcctt gatttgtggg tctacaacac acaaggctac 
     361 ttccctgatt ggcagaacta cacaccaggg ccagggatcc gatatccact gacctttgga 
     421 tggtgcttca agcaagggcg aattctg
//
last modified: Tue May 31 10:56 2022


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