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LOCUS	    FJ430424		     421 bp    RNA     linear	VRL 16-DEC-2008
DEFINITION  HIV-1 isolate ES2plasma3 from USA nef protein (nef) gene, partial
	    cds
ACCESSION   FJ430424
VERSION     FJ430424.1 GI:217323123
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 421)
            Show all sequences for reference 1
  AUTHORS   Bailey,J.R., Brennan,T.P., O'Connell,K.A., Siliciano,R.F. and
	    Blankson,J.N.
  TITLE     Evidence of CD8+ T-cell-mediated selective pressure on human
	    immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors.
  JOURNAL   J. Virol.. 83(1); 88-97 (2009)
  PUBMED    18945771
REFERENCE   2 (bases 1 to 421)
            Show all sequences for reference 2
  AUTHORS   Blankson,J.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Medicine, Johns Hopkins University School
	    of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Salgado,M., Brennan,T.P., O'Conell,K.A., Bailey,J.R., Ray,S.C.,
	    Siliciano,R.F. and Blankson,J.N.
  TITLE     Evolution of the HIV-1 nef gene in HLA-B*57 Positive Elite
	    Suppressors
  JOURNAL   Retrovirology 7 (1), 94 (2010)
  PUBMED    21059238
FEATURES             Location/Qualifiers
     source	     1..421
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="ES2plasma3"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="collected 2004-2005"
     gene	     1..>421
		     /gene="nef"
     CDS	     1..>421
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACK37971.1"
		     /db_xref="GI:217323124"
		     /translation="MGGKWSKSSVVGWPTVRERMRRAEPAADGVGAVSRDLEKHGAIT
		     SSNTATNNADCAWLEAQEEGEVGFPVKPQVPLRPMTYKAAVDISHFLKEKGGLEGLIY
		     SQKRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTYG"
BASE COUNT	135 a	  86 c	  117 g     83 t
ORIGIN
       1 atgggtggta agtggtcaaa aagtagtgtg gttggatggc ctactgtaag ggaaagaatg 
      61 agacgagctg agccagcagc agatggggtg ggagcagtat ctcgagacct ggaaaaacat 
     121 ggagcaatca caagtagcaa tacagcaacc aacaatgctg attgtgcctg gctagaagca 
     181 caagaggagg gggaggtggg ttttccagtc aaacctcagg tacctttaag accaatgacc 
     241 tacaaggcag ctgtagacat tagccacttt ttaaaagaaa aggggggact ggaagggcta 
     301 atttactccc aaaaaagaca agatatcctt gatctgtggg tctaccacac acaaggctac 
     361 ttccctgatt ggcagaacta cacaccaggg ccagggacca gatatccact gacctatgga 
     421 t
//
last modified: Tue May 31 10:56 2022


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