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LOCUS FJ430424 421 bp RNA linear VRL 16-DEC-2008
DEFINITION HIV-1 isolate ES2plasma3 from USA nef protein (nef) gene, partial
cds
ACCESSION FJ430424
VERSION FJ430424.1 GI:217323123
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 421)
Show all sequences for reference 1
AUTHORS Bailey,J.R., Brennan,T.P., O'Connell,K.A., Siliciano,R.F. and
Blankson,J.N.
TITLE Evidence of CD8+ T-cell-mediated selective pressure on human
immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors.
JOURNAL J. Virol.. 83(1); 88-97 (2009)
PUBMED 18945771
REFERENCE 2 (bases 1 to 421)
Show all sequences for reference 2
AUTHORS Blankson,J.N.
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Medicine, Johns Hopkins University School
of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Salgado,M., Brennan,T.P., O'Conell,K.A., Bailey,J.R., Ray,S.C.,
Siliciano,R.F. and Blankson,J.N.
TITLE Evolution of the HIV-1 nef gene in HLA-B*57 Positive Elite
Suppressors
JOURNAL Retrovirology 7 (1), 94 (2010)
PUBMED 21059238
FEATURES Location/Qualifiers
source 1..421
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="ES2plasma3"
/db_xref="taxon:11676"
/country="USA"
/note="collected 2004-2005"
gene 1..>421
/gene="nef"
CDS 1..>421
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ACK37971.1"
/db_xref="GI:217323124"
/translation="MGGKWSKSSVVGWPTVRERMRRAEPAADGVGAVSRDLEKHGAIT
SSNTATNNADCAWLEAQEEGEVGFPVKPQVPLRPMTYKAAVDISHFLKEKGGLEGLIY
SQKRQDILDLWVYHTQGYFPDWQNYTPGPGTRYPLTYG"
BASE COUNT 135 a 86 c 117 g 83 t
ORIGIN
1 atgggtggta agtggtcaaa aagtagtgtg gttggatggc ctactgtaag ggaaagaatg
61 agacgagctg agccagcagc agatggggtg ggagcagtat ctcgagacct ggaaaaacat
121 ggagcaatca caagtagcaa tacagcaacc aacaatgctg attgtgcctg gctagaagca
181 caagaggagg gggaggtggg ttttccagtc aaacctcagg tacctttaag accaatgacc
241 tacaaggcag ctgtagacat tagccacttt ttaaaagaaa aggggggact ggaagggcta
301 atttactccc aaaaaagaca agatatcctt gatctgtggg tctaccacac acaaggctac
361 ttccctgatt ggcagaacta cacaccaggg ccagggacca gatatccact gacctatgga
421 t
//
last modified: Tue May 31 10:56 2022