HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ430383		     621 bp    DNA     linear	VRL 16-DEC-2008
DEFINITION  HIV-1 isolate ES9provirus4 from USA nef protein (nef) gene,
	    complete cds
ACCESSION   FJ430383
VERSION     FJ430383.1 GI:217323042
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 621)
            Show all sequences for reference 1
  AUTHORS   Bailey,J.R., Brennan,T.P., O'Connell,K.A., Siliciano,R.F. and
	    Blankson,J.N.
  TITLE     Evidence of CD8+ T-cell-mediated selective pressure on human
	    immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors.
  JOURNAL   J. Virol.. 83(1); 88-97 (2009)
  PUBMED    18945771
REFERENCE   2 (bases 1 to 621)
            Show all sequences for reference 2
  AUTHORS   Blankson,J.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Medicine, Johns Hopkins University School
	    of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Salgado,M., Brennan,T.P., O'Conell,K.A., Bailey,J.R., Ray,S.C.,
	    Siliciano,R.F. and Blankson,J.N.
  TITLE     Evolution of the HIV-1 nef gene in HLA-B*57 Positive Elite
	    Suppressors
  JOURNAL   Retrovirology 7 (1), 94 (2010)
  PUBMED    21059238
FEATURES             Location/Qualifiers
     source	     1..621
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ES9provirus4"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="collected 2004-2005"
     gene	     1..621
		     /gene="nef"
     CDS	     1..621
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACK37931.1"
		     /db_xref="GI:217323043"
		     /translation="MGGKWSKSSVVGWPGVRERMRRAEPAADGVGAVSRDLEKHGAIT
		     SSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIH
		     SQRRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPEKVEEANEGE
		     NNSLLHPMSLHGIEDPEKEVLVWRFDSRLAFHHVARELHPEYYKDC"
BASE COUNT	189 a	 122 c	  183 g    127 t
ORIGIN
       1 atgggtggta agtggtcaaa aagtagtgtg gttggatggc ctggggtaag ggaaagaatg 
      61 agacgagctg agccagcagc agatggggtg ggagcagtat ctcgagacct ggaaaaacat 
     121 ggagcaatca caagtagcaa tacagcagct accaatgctg attgtgcctg gctagaagca 
     181 caagaggagg aggaggtggg ttttccagtc aggcctcaag tacctttaag accaatgact 
     241 tacaagggag ctttagatct tagccacttt ttaaaagaaa aggggggact ggaagggcta 
     301 attcactccc aaagaagaca agatatcctt gatctgtggg tctacaacac acaaggctac 
     361 ttccctgatt ggcagaacta cacaccaggg ccagggatca gatatccact gacctttgga 
     421 tggtgcttca agctagtacc agttgagcca gagaaggtag aagaggccaa tgaaggagag 
     481 aataacagct tgttacaccc tatgagcctg catgggatag aggacccgga gaaagaagtg 
     541 ttagtatgga ggtttgacag ccgcctggca tttcatcatg tagcccgaga gctgcatccg 
     601 gagtactaca aggactgctg a
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health