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LOCUS	    FJ387531		    1506 bp    DNA     linear	VRL 12-NOV-2008
DEFINITION  HIV-1 isolate BVC_005 from USA gag protein (gag) gene, complete cds
ACCESSION   FJ387531
VERSION     FJ387531.1 GI:212278152
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1506)
            Show all sequences for reference 1
  AUTHORS   Miura,T., Brockman,M.A., Schneidewind,A., Lobritz,M., Pereyra,F.,
	    Rathod,A., Block,B.L., Brumme,Z.L., Brumme,C.J., Baker,B.,
	    Rothchild,A.C., Li,B., Trocha,A., Cutrell,E., Frahm,N., Brander,C.,
	    Toth,I., Arts,E.J., Allen,T.M. and Walker,B.D.
  TITLE     HLA-B57/B*5801 HIV-1 ELITE CONTROLLERS SELECT FOR RARE GAG VARIANTS
	    ASSOCIATED WITH REDUCED VIRAL REPLICATION CAPACITY AND STRONG CTL
	    RECOGNITION.
  JOURNAL   J Virol. 2008 Dec 30.
  PUBMED    19116253
REFERENCE   2 (bases 1 to 1506)
            Show all sequences for reference 2
  AUTHORS   Miura,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2008) AIDS Research Center, Massachusetts General
	    Hospital, 149 13th St., Charlestown, MA 02129, USA
FEATURES             Location/Qualifiers
     source	     1..1506
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="BVC_005"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     1..1506
		     /gene="gag"
     CDS	     1..1506
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACJ23074.1"
		     /db_xref="GI:212278153"
		     /translation="MGARASVLSGGQLDRWEKIRLRPGGKKKYRLKHIVWASRELERF
		     AVNPGLLETAGGCRQILEQLQPSLQTGSEELRSLYNTVATLYCVHQKLEVKDTKEALD
		     KIEEEQNKSKKKAQQAAAAADTGNNSKVSQNYPIVQNLQGQMVHQSLSPRTLNAWVKV
		     IEEKAFSPEIIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVH
		     PVQAGPVAPGQIREPRGSDIAGTTSNLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIV
		     RMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKH
		     ILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQVTNPTTIMMQRGNFKQRKTIK
		     CFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFL
		     QSRPEPTAPPEESFRFGEGTATPSQKQGPIDEELYPLASLKSLFGNDPSSQ"
BASE COUNT	551 a	 296 c	  372 g    287 t
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggacaattgg atagatggga aaaaattcgg 
      61 ctacggccag gaggaaagaa aaaatataga ttaaaacata tagtatgggc aagcagggag 
     121 ttggaacgat tcgcagttaa tcctggcctt ttagaaacag cagggggctg tagacaaata 
     181 ttggaacagc tacaaccatc ccttcagaca ggatcagaag aacttagatc cttatataat 
     241 acagtagcaa ccctctattg tgtgcatcaa aagttagagg taaaagacac caaggaggct 
     301 ttagataaga tagaggaaga acaaaacaaa agtaagaaaa aggcacagca agcagcagca 
     361 gcagctgaca caggaaacaa cagcaaggtc agccaaaatt accctatagt gcagaatctt 
     421 caggggcaaa tggtacatca gtccttatca cctagaactt taaatgcatg ggtaaaagta 
     481 atagaagaga aggccttcag cccagaaata atacccatgt ttacagcatt atcggaggga 
     541 gccaccccac aagatttaaa caccatgcta aacacagtgg ggggacatca agcagccatg 
     601 cagatgttaa aagagaccat caatgaggag gctgccgaat gggatagagt gcatccagtg 
     661 caggcagggc ctgttgcacc aggccagata agagaaccaa ggggaagtga catagcagga 
     721 actactagta accttcagga acaaatagca tggatgacaa ataatccacc tatcccagta 
     781 ggagaaattt ataaaagatg gataatcctg ggattaaata aaatagtgag aatgtatagt 
     841 cctgtcagca ttttggacat aagacaagga ccaaaggaac cctttagaga ctatgtagac 
     901 cggttctata aaactctaag agctgagcaa gcctcacagg aggtaaaaaa ttggatgaca 
     961 gaaaccttat tggttcaaaa ttcaaaccca gattgtaaac atattctaaa agcattggga 
    1021 ccaggagcta ccctagaaga aatgatgaca gcatgtcagg gagtaggggg acccagccat 
    1081 aaagcaagag ttttggccga agcaatgagc caagtaacaa atccaactac cataatgatg 
    1141 cagagaggca atttcaagca aagaaagact attaagtgct tcaattgtgg aaaagaaggg 
    1201 cacacagcca gaaattgcag ggcccctagg aaaaagggct gttggaagtg tggaaaggaa 
    1261 ggacaccaaa tgaaagattg tactgagaga caggctaatt ttttagggaa aatctggcct 
    1321 tcccacaagg gaaggccggg gaatttcctt cagagcagac cagagccaac agccccacca 
    1381 gaggagagct tcaggtttgg ggaagggaca gcaactccct cacagaagca ggggccgata 
    1441 gacgaggaac tgtatccttt agcttccctc aaatcactct ttggcaacga cccctcgtca 
    1501 caataa
//
last modified: Tue May 31 10:56 2022


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