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LOCUS FJ387531 1506 bp DNA linear VRL 12-NOV-2008
DEFINITION HIV-1 isolate BVC_005 from USA gag protein (gag) gene, complete cds
ACCESSION FJ387531
VERSION FJ387531.1 GI:212278152
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1506)
Show all sequences for reference 1
AUTHORS Miura,T., Brockman,M.A., Schneidewind,A., Lobritz,M., Pereyra,F.,
Rathod,A., Block,B.L., Brumme,Z.L., Brumme,C.J., Baker,B.,
Rothchild,A.C., Li,B., Trocha,A., Cutrell,E., Frahm,N., Brander,C.,
Toth,I., Arts,E.J., Allen,T.M. and Walker,B.D.
TITLE HLA-B57/B*5801 HIV-1 ELITE CONTROLLERS SELECT FOR RARE GAG VARIANTS
ASSOCIATED WITH REDUCED VIRAL REPLICATION CAPACITY AND STRONG CTL
RECOGNITION.
JOURNAL J Virol. 2008 Dec 30.
PUBMED 19116253
REFERENCE 2 (bases 1 to 1506)
Show all sequences for reference 2
AUTHORS Miura,T.
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2008) AIDS Research Center, Massachusetts General
Hospital, 149 13th St., Charlestown, MA 02129, USA
FEATURES Location/Qualifiers
source 1..1506
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="BVC_005"
/db_xref="taxon:11676"
/country="USA"
gene 1..1506
/gene="gag"
CDS 1..1506
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ACJ23074.1"
/db_xref="GI:212278153"
/translation="MGARASVLSGGQLDRWEKIRLRPGGKKKYRLKHIVWASRELERF
AVNPGLLETAGGCRQILEQLQPSLQTGSEELRSLYNTVATLYCVHQKLEVKDTKEALD
KIEEEQNKSKKKAQQAAAAADTGNNSKVSQNYPIVQNLQGQMVHQSLSPRTLNAWVKV
IEEKAFSPEIIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVH
PVQAGPVAPGQIREPRGSDIAGTTSNLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIV
RMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKH
ILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQVTNPTTIMMQRGNFKQRKTIK
CFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFL
QSRPEPTAPPEESFRFGEGTATPSQKQGPIDEELYPLASLKSLFGNDPSSQ"
BASE COUNT 551 a 296 c 372 g 287 t
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggacaattgg atagatggga aaaaattcgg
61 ctacggccag gaggaaagaa aaaatataga ttaaaacata tagtatgggc aagcagggag
121 ttggaacgat tcgcagttaa tcctggcctt ttagaaacag cagggggctg tagacaaata
181 ttggaacagc tacaaccatc ccttcagaca ggatcagaag aacttagatc cttatataat
241 acagtagcaa ccctctattg tgtgcatcaa aagttagagg taaaagacac caaggaggct
301 ttagataaga tagaggaaga acaaaacaaa agtaagaaaa aggcacagca agcagcagca
361 gcagctgaca caggaaacaa cagcaaggtc agccaaaatt accctatagt gcagaatctt
421 caggggcaaa tggtacatca gtccttatca cctagaactt taaatgcatg ggtaaaagta
481 atagaagaga aggccttcag cccagaaata atacccatgt ttacagcatt atcggaggga
541 gccaccccac aagatttaaa caccatgcta aacacagtgg ggggacatca agcagccatg
601 cagatgttaa aagagaccat caatgaggag gctgccgaat gggatagagt gcatccagtg
661 caggcagggc ctgttgcacc aggccagata agagaaccaa ggggaagtga catagcagga
721 actactagta accttcagga acaaatagca tggatgacaa ataatccacc tatcccagta
781 ggagaaattt ataaaagatg gataatcctg ggattaaata aaatagtgag aatgtatagt
841 cctgtcagca ttttggacat aagacaagga ccaaaggaac cctttagaga ctatgtagac
901 cggttctata aaactctaag agctgagcaa gcctcacagg aggtaaaaaa ttggatgaca
961 gaaaccttat tggttcaaaa ttcaaaccca gattgtaaac atattctaaa agcattggga
1021 ccaggagcta ccctagaaga aatgatgaca gcatgtcagg gagtaggggg acccagccat
1081 aaagcaagag ttttggccga agcaatgagc caagtaacaa atccaactac cataatgatg
1141 cagagaggca atttcaagca aagaaagact attaagtgct tcaattgtgg aaaagaaggg
1201 cacacagcca gaaattgcag ggcccctagg aaaaagggct gttggaagtg tggaaaggaa
1261 ggacaccaaa tgaaagattg tactgagaga caggctaatt ttttagggaa aatctggcct
1321 tcccacaagg gaaggccggg gaatttcctt cagagcagac cagagccaac agccccacca
1381 gaggagagct tcaggtttgg ggaagggaca gcaactccct cacagaagca ggggccgata
1441 gacgaggaac tgtatccttt agcttccctc aaatcactct ttggcaacga cccctcgtca
1501 caataa
//
last modified: Tue May 31 10:56 2022