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LOCUS FJ348572 895 bp RNA linear VRL 09-NOV-2008
DEFINITION HIV-1 isolate 07ZA.NEV1169W68P from South Africa pol protein (pol)
gene, partial cds
ACCESSION FJ348572
VERSION FJ348572.1 GI:211908167
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 895)
Show all sequences for reference 1
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Persistent minority K103N mutations among women exposed to
single-dose nevirapine and virologic response to nonnucleoside
reverse-transcriptase inhibitor-based therapy.
JOURNAL Clin. Infect. Dis.. 48(4); 462-72 (2009)
PUBMED 19133804
REFERENCE 2 (bases 1 to 895)
Show all sequences for reference 2
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2008) AIDS Virus Research Unit, National
Institute for Communicable Diseases, 1 Modderfontein Rd
Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES Location/Qualifiers
source 1..895
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="07ZA.NEV1169W68P"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="Jun-2007"
/note="subtype: C"
gene <1..>895
/gene="pol"
CDS <1..>895
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACJ12561.1"
/db_xref="GI:211908168"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNEKPGIRYQYNVLPQGWKGSPAIF
QCSMTKILEPFRTKNPDLVICQYVDDLYVGSDLEIGQHRAKIDELREHLLKWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIRV
KELCKLLRGTKALTDIVPLTEE"
BASE COUNT 351 a 149 c 191 g 203 t 1 other
ORIGIN
1 ccaattagtc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggccctaaa
61 gttaaacaat ggccattgac agaggaaaaa ataaaagcct taacagcaat ttgtgaggaa
121 atggagaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccagta
181 tttgccataa aaaagaagga cagtactaag tggagaaaat tagtagattt cagggaactt
241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcaggatta
301 aaaaagaaaa aatcagtgac agtactggat gtgggggatg catatttttc agttccttta
361 gatgaagact tcaggaaata tactgcattc accataccta gtataaacaa tgaaaaacca
421 gggattagat atcaatataa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 cagtgtagca tgacaaaaat cttggagccc tttaggacaa aaaatccaga cctagttatc
541 tgtcaatatg tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca
601 aaaatagatg agttaaggga acatctattg aaatggggat ttaccacmcc agacaagaaa
661 catcaaaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca
721 gtacagccta tacagctgcc agaaaaggat agctggactg tcaatgatat acagaagtta
781 gtgggaaaat taaactgggc aagccagatt tatccaggga ttagagtaaa ggaactgtgt
841 aaacttctta ggggaaccaa agcactaaca gacatagtac cactgactga agaag
//
last modified: Tue May 31 10:56 2022