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LOCUS	    FJ348572		     895 bp    RNA     linear	VRL 09-NOV-2008
DEFINITION  HIV-1 isolate 07ZA.NEV1169W68P from South Africa pol protein (pol)
	    gene, partial cds
ACCESSION   FJ348572
VERSION     FJ348572.1 GI:211908167
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 895)
            Show all sequences for reference 1
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Persistent minority K103N mutations among women exposed to
	    single-dose nevirapine and virologic response to nonnucleoside
	    reverse-transcriptase inhibitor-based therapy.
  JOURNAL   Clin. Infect. Dis.. 48(4); 462-72 (2009)
  PUBMED    19133804
REFERENCE   2 (bases 1 to 895)
            Show all sequences for reference 2
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2008) AIDS Virus Research Unit, National
	    Institute for Communicable Diseases, 1 Modderfontein Rd
	    Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES             Location/Qualifiers
     source	     1..895
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="07ZA.NEV1169W68P"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="Jun-2007"
		     /note="subtype: C"
     gene	     <1..>895
		     /gene="pol"
     CDS	     <1..>895
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACJ12561.1"
		     /db_xref="GI:211908168"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
		     GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNEKPGIRYQYNVLPQGWKGSPAIF
		     QCSMTKILEPFRTKNPDLVICQYVDDLYVGSDLEIGQHRAKIDELREHLLKWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIRV
		     KELCKLLRGTKALTDIVPLTEE"
BASE COUNT	351 a	 149 c	  191 g    203 t      1 other
ORIGIN
       1 ccaattagtc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggccctaaa 
      61 gttaaacaat ggccattgac agaggaaaaa ataaaagcct taacagcaat ttgtgaggaa 
     121 atggagaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccagta 
     181 tttgccataa aaaagaagga cagtactaag tggagaaaat tagtagattt cagggaactt 
     241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcaggatta 
     301 aaaaagaaaa aatcagtgac agtactggat gtgggggatg catatttttc agttccttta 
     361 gatgaagact tcaggaaata tactgcattc accataccta gtataaacaa tgaaaaacca 
     421 gggattagat atcaatataa tgtgcttcca cagggatgga aaggatcacc agcaatattc 
     481 cagtgtagca tgacaaaaat cttggagccc tttaggacaa aaaatccaga cctagttatc 
     541 tgtcaatatg tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca 
     601 aaaatagatg agttaaggga acatctattg aaatggggat ttaccacmcc agacaagaaa 
     661 catcaaaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca 
     721 gtacagccta tacagctgcc agaaaaggat agctggactg tcaatgatat acagaagtta 
     781 gtgggaaaat taaactgggc aagccagatt tatccaggga ttagagtaaa ggaactgtgt 
     841 aaacttctta ggggaaccaa agcactaaca gacatagtac cactgactga agaag
//
last modified: Tue May 31 10:56 2022


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