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LOCUS FJ348500 931 bp DNA linear VRL 09-NOV-2008
DEFINITION HIV-1 isolate 05ZA.NEV1155W-1BC from South Africa pol protein (pol)
gene, partial cds
ACCESSION FJ348500
VERSION FJ348500.1 GI:211908189
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 931)
Show all sequences for reference 1
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Persistent minority K103N mutations among women exposed to
single-dose nevirapine and virologic response to nonnucleoside
reverse-transcriptase inhibitor-based therapy.
JOURNAL Clin. Infect. Dis.. 48(4); 462-72 (2009)
PUBMED 19133804
REFERENCE 2 (bases 1 to 931)
Show all sequences for reference 2
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2008) AIDS Virus Research Unit, National
Institute for Communicable Diseases, 1 Modderfontein Rd
Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES Location/Qualifiers
source 1..931
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05ZA.NEV1155W-1BC"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="Feb-2005"
/note="subtype: C"
gene <1..>931
/gene="pol"
CDS <1..>931
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACJ12572.1"
/db_xref="GI:211908190"
/translation="LTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTKEKIEAL
TAICEEMEKEGKITKIGPDNPYNTPIFAIKKKDSTKWRKLVDFRELXKRTQDFWEVQL
GIPHPAGLKKKKSVTVLDVGDAYFSIPLDESFRKYTAFTIPSINNETPGIRYQYNVLP
QGWKGSPAXFQSSMTKILEPFRAQNPDLVIYQYMDDLYVGSDLEIGQHRAKIEKLREH
LLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNW
ASQIYPGIKVRQLCKLLRGAKALTDIVPLTEEA"
BASE COUNT 361 a 157 c 195 g 214 t 4 other
ORIGIN
1 tgttgactca gcttggatgc acattaaatt ttccaattag tcctattgaa actgtaccag
61 taaaattaaa gccaggaatg gatggcccaa aggttaaaca atggccattg acaaaagaga
121 aaatagaagc attaacagca atttgtgaag aaatggaaaa ggaaggaaaa attacaaaaa
181 ttgggcctga caatccatat aacactccma tatttgccat aaaaaagaag gacagtacaa
241 agtggagaaa attagtagat ttcagggaac ttnataaaag aactcaagac ttttgggaag
301 tycagttagg aataccacac ccagcagggt taaaaaagaa aaaatcagtg acagtactgg
361 atgtggggga tgcatatttt tcaattcctt tggatgaaag cttcaggaaa tatactgcct
421 tcaccatacc tagtataaac aatgaaacac cagggattag ataccaatat aatgttcttc
481 cacagggatg gaaaggatca ccagcastat ttcagagtag catgacaaaa atcttagagc
541 catttagggc acaaaatcca gatctagtta tctatcaata tatggatgac ttgtatgtag
601 gatctgactt agaaataggg caacatagag caaaaataga gaagttaagg gaacatttat
661 tgagatgggg acttaccaca ccagacaaga aacatcagaa agaaccccca tttctttgga
721 tggggtatga actccatcct gacaaatgga cagtacagcc tatacagctg ccagaaaaag
781 atagctggac tgtcaatgat atacaaaagt tagtggggaa attaaactgg gccagtcaga
841 tttacccagg gattaaagta aggcaactat gtaaactcct taggggagcc aaagcactaa
901 cagatatagt accactgact gaagaagcag a
//
last modified: Tue May 31 10:56 2022