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LOCUS	    FJ348500		     931 bp    DNA     linear	VRL 09-NOV-2008
DEFINITION  HIV-1 isolate 05ZA.NEV1155W-1BC from South Africa pol protein (pol)
	    gene, partial cds
ACCESSION   FJ348500
VERSION     FJ348500.1 GI:211908189
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 931)
            Show all sequences for reference 1
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Persistent minority K103N mutations among women exposed to
	    single-dose nevirapine and virologic response to nonnucleoside
	    reverse-transcriptase inhibitor-based therapy.
  JOURNAL   Clin. Infect. Dis.. 48(4); 462-72 (2009)
  PUBMED    19133804
REFERENCE   2 (bases 1 to 931)
            Show all sequences for reference 2
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2008) AIDS Virus Research Unit, National
	    Institute for Communicable Diseases, 1 Modderfontein Rd
	    Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES             Location/Qualifiers
     source	     1..931
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05ZA.NEV1155W-1BC"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="Feb-2005"
		     /note="subtype: C"
     gene	     <1..>931
		     /gene="pol"
     CDS	     <1..>931
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACJ12572.1"
		     /db_xref="GI:211908190"
		     /translation="LTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTKEKIEAL
		     TAICEEMEKEGKITKIGPDNPYNTPIFAIKKKDSTKWRKLVDFRELXKRTQDFWEVQL
		     GIPHPAGLKKKKSVTVLDVGDAYFSIPLDESFRKYTAFTIPSINNETPGIRYQYNVLP
		     QGWKGSPAXFQSSMTKILEPFRAQNPDLVIYQYMDDLYVGSDLEIGQHRAKIEKLREH
		     LLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNW
		     ASQIYPGIKVRQLCKLLRGAKALTDIVPLTEEA"
BASE COUNT	361 a	 157 c	  195 g    214 t      4 other
ORIGIN
       1 tgttgactca gcttggatgc acattaaatt ttccaattag tcctattgaa actgtaccag 
      61 taaaattaaa gccaggaatg gatggcccaa aggttaaaca atggccattg acaaaagaga 
     121 aaatagaagc attaacagca atttgtgaag aaatggaaaa ggaaggaaaa attacaaaaa 
     181 ttgggcctga caatccatat aacactccma tatttgccat aaaaaagaag gacagtacaa 
     241 agtggagaaa attagtagat ttcagggaac ttnataaaag aactcaagac ttttgggaag 
     301 tycagttagg aataccacac ccagcagggt taaaaaagaa aaaatcagtg acagtactgg 
     361 atgtggggga tgcatatttt tcaattcctt tggatgaaag cttcaggaaa tatactgcct 
     421 tcaccatacc tagtataaac aatgaaacac cagggattag ataccaatat aatgttcttc 
     481 cacagggatg gaaaggatca ccagcastat ttcagagtag catgacaaaa atcttagagc 
     541 catttagggc acaaaatcca gatctagtta tctatcaata tatggatgac ttgtatgtag 
     601 gatctgactt agaaataggg caacatagag caaaaataga gaagttaagg gaacatttat 
     661 tgagatgggg acttaccaca ccagacaaga aacatcagaa agaaccccca tttctttgga 
     721 tggggtatga actccatcct gacaaatgga cagtacagcc tatacagctg ccagaaaaag 
     781 atagctggac tgtcaatgat atacaaaagt tagtggggaa attaaactgg gccagtcaga 
     841 tttacccagg gattaaagta aggcaactat gtaaactcct taggggagcc aaagcactaa 
     901 cagatatagt accactgact gaagaagcag a
//
last modified: Tue May 31 10:56 2022


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