View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS FJ185908 801 bp DNA linear VRL 17-MAR-2009
DEFINITION HIV-1 isolate ZM233M_17DEC02_PL_G1 from Zambia envelope
glycoprotein (env) gene, partial cds
ACCESSION FJ185908
VERSION FJ185908.1 GI:224939358
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 801)
Show all sequences for reference 1
AUTHORS Haaland,R.E., Hawkins,P.A., Salazar-Gonzalez,J., Johnson,A.,
Tichacek,A., Karita,E., Manigart,O., Mulenga,J., Keele,B.F.,
Shaw,G.M., Hahn,B.H., Allen,S.A., Derdeyn,C.A. and Hunter,E.
TITLE Inflammatory genital infections mitigate a severe genetic
bottleneck in heterosexual transmission of subtype A and C HIV-1
JOURNAL PLoS Pathog. 5 (1), E1000274 (2009)
PUBMED 19165325
REFERENCE 2 (bases 1 to 801)
Show all sequences for reference 2
AUTHORS Haaland,R.E., Hawkins,P.A., Salazar-Gonzalez,J., Johnson,A.T.,
Tichacek,A., Karita,E., Manigart,O., Mulenga,J., Keele,B.F.,
Shaw,G.M., Hahn,B.H., Allen,S., Derdeyn,C.A. and Hunter,E.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2008) Pathology and Laboratory Medicine, Emory
University, 954 Gatewood Rd NE, Atlanta, GA 30329, USA
FEATURES Location/Qualifiers
source 1..801
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ZM233M_17DEC02_PL_G1"
/db_xref="taxon:11676"
/country="Zambia"
/collection_date="17-Dec-2002"
/note="subtype: C"
gene <1..>801
/gene="env"
CDS <1..>801
/gene="env"
/note="V1-V4 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACN70098.1"
/db_xref="GI:224939359"
/translation="CSTYNNTHNISKEMKICSFNMTTELRDKKRKVNVLFYKLDLVPL
TNSSNTTNYRLISCNTSTITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCN
NVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTDNVKIIIVQLNETINITCTR
PNNNTRKSIRIGPGQSFYATGEIVGNIREAHCNISASKWNKTLERVRTKLKEHFPNKT
IEFEPSSGGDLEITTHSFNCGGEFFYCNTSGLFNSAINGTLTSNVTLPC"
BASE COUNT 314 a 134 c 138 g 215 t
ORIGIN
1 tgtagtacct acaataatac ccacaatatt agtaaggaga tgaaaatttg ctctttcaat
61 atgaccacag aactaagaga taagaaacgg aaagtgaatg tactttttta taaacttgat
121 ttagtgccac ttaccaattc tagcaatact accaattata gattaataag ttgtaatact
181 tcaaccataa cacaagcctg tccaaaggtc tcttttgacc caattcctat acattattgt
241 gctccagctg gttatgcgat tctaaagtgt aataataaga cattcaatgg gacaggacca
301 tgcaataatg ttagtacagt gcaatgtaca catggaatta agccagtggt atcaactcaa
361 ttactgttaa atggtagcct agcagaagaa gagataataa ttagatctga aaatctgaca
421 gataatgtca aaataataat agtacaactt aatgaaacta taaacattac gtgtacaaga
481 cctaacaata atacaaggaa aagtataaga ataggaccgg gacaatcatt ctatgcaaca
541 ggtgaaatag taggaaacat aagggaagca cattgtaaca ttagtgcaag caaatggaat
601 aaaactttag aaagggtaag aacaaaatta aaagaacact tccctaataa aacaatagaa
661 tttgaaccat cctcaggagg ggacctagaa attacaacac atagctttaa ttgtggagga
721 gagtttttct attgcaatac atcaggcctg tttaatagtg cgattaatgg cacgcttaca
781 tctaatgtca cgcttccatg c
//
last modified: Tue May 31 10:56 2022