View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS FJ030727 1176 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_210_11_999237 from Denmark pol protein (pol)
gene, partial cds
ACCESSION FJ030727
VERSION FJ030727.1 GI:226374032
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1176)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1176)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1176
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_210_11_999237"
/db_xref="taxon:11676"
/country="Denmark"
/collection_date="1998"
gene <1..>1176
/gene="pol"
CDS <1..>1176
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52242.1"
/db_xref="GI:226374033"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMDLPGRWKP
KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRRHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
"
BASE COUNT 459 a 192 c 249 g 276 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg acaactaaag
61 gaggctctat tagatacagg agcagatgat acagtattag aagaaatgga cttaccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 cagataccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aagaattggg cctgaaaatc catataatac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt gcccttggat
661 aaagacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 cagtacatgg atgatttgta tgtaggatct gatttagaaa tagggcaaca tagaacaaaa
901 atagaggaac tgagacgaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagagc ctccattcct ttggatgggg tatgaactcc atcctgataa atggacagtg
1021 cagcctatag tgctgccaga aaaagacagt tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca gttatgtaaa
1141 ctccttagag gaaccaaagc actaacagaa gtaata
//
last modified: Tue May 31 10:56 2022