HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ030727		    1176 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_210_11_999237 from Denmark pol protein (pol)
	    gene, partial cds
ACCESSION   FJ030727
VERSION     FJ030727.1 GI:226374032
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1176)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 1176)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..1176
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_210_11_999237"
		     /db_xref="taxon:11676"
		     /country="Denmark"
		     /collection_date="1998"
     gene	     <1..>1176
		     /gene="pol"
     CDS	     <1..>1176
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52242.1"
		     /db_xref="GI:226374033"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMDLPGRWKP
		     KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRRHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
		     "
BASE COUNT	459 a	 192 c	  249 g    276 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg acaactaaag 
      61 gaggctctat tagatacagg agcagatgat acagtattag aagaaatgga cttaccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aagaattggg cctgaaaatc catataatac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt gcccttggat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 cagtacatgg atgatttgta tgtaggatct gatttagaaa tagggcaaca tagaacaaaa 
     901 atagaggaac tgagacgaca tctgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagagc ctccattcct ttggatgggg tatgaactcc atcctgataa atggacagtg 
    1021 cagcctatag tgctgccaga aaaagacagt tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca gttatgtaaa 
    1141 ctccttagag gaaccaaagc actaacagaa gtaata
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health