View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS FJ030722 1008 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_185_11_151207 from Denmark pol protein (pol)
gene, partial cds
ACCESSION FJ030722
VERSION FJ030722.1 GI:226374022
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1008)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1008)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1008
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_185_11_151207"
/db_xref="taxon:11676"
/country="Denmark"
/collection_date="1987"
gene <1..>1008
/gene="pol"
CDS <1..>1008
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52237.1"
/db_xref="GI:226374023"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGNKAIGXVLIGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEXEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PD"
BASE COUNT 394 a 164 c 206 g 239 t 5 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaagatgat agggggaatt ggaggtttta tcaaagtgag acagtatgat
181 caaataccca tagaaatctg tggaaataaa gctataggtm cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 ataagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg tacagaaatg
421 gaaarggaag ggaaaatttc aaaaattggg cctgaaaatc catataatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaay
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagaattca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacar ggatggaaag gatcaccagc aatattccaa
781 tgcagyatga caaaaatctt agagccgttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgat
//
last modified: Tue May 31 10:56 2022