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LOCUS FJ030685 1050 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_133_1_7371 from Italy pol protein (pol) gene,
partial cds
ACCESSION FJ030685
VERSION FJ030685.1 GI:226373948
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1050)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1050)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1050
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_133_1_7371"
/db_xref="taxon:11676"
/country="Italy"
/collection_date="2002"
gene <1..>1050
/gene="pol"
CDS <1..>1050
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52200.1"
/db_xref="GI:226373949"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDINLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFSPI
EAVPVILKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGXISKIGPENPYNTPVFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
KDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQXPDIV
IYQYMXDLYVGSDLEIGQHXTKVEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPILLPEKDSWT"
BASE COUNT 401 a 176 c 215 g 245 t 13 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggagg gcaactaaag
61 gaagctctrt tagatacagg agcagatgat acagtattag aagatataaa tttrccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag acagtatgat
181 cagataccca tagaaatctg tggacataaa gctataggta cagtrttagt aggacctaca
241 cctgtcaaca taattggaag aaatttgttg actcagcttg gttgcacttt aaattttagt
301 cctattgaag ctgtaccagt aatattaaag ccaggaatgg atggcccaaa agttaaacaa
361 tggccattga cagaagaaaa aataaaagca ttagtagaaa tttgtacaga aatggaaaag
421 gaagggaama tttcaaaaat tgggcctgaa aatccataca atactccagt atttgccata
481 aagaaaaaag acagtactaa atggagaaaa ttagtagatt tcagagaact taataagaga
541 actcaagact tctgggaagt wcaaytagga ataccacatc ccgcagggtt aaaaaagaaa
601 aaatcagtma cagtactgga tgtgggtgat gcatattttt cagttccytt agataaagac
661 ttcaggaagt atactgcatt caccatacct agtacaaaca atgagacacc agggattaga
721 tatcagtaca atgtgcttcc acagggatgg aaaggatcac cagcaatatt ccaaagtagc
781 atgacaaaaa tcttagagcc ctttagaaaa caawatccag acatagttat ctatcaatac
841 atgkatgayt tgtatgtagg atctgactta gaaatagggc agcatagwac aaaagtagag
901 gaactgagac amcatctgtt gaagtgggga tttaccacac cagacaaaaa acatcagaaa
961 gaacctccat tcctttggat gggttatgaa ctccatcctg ataaatggac agtacagccc
1021 atattgctgc ccgaaaaaga cagctggacg
//
last modified: Tue May 31 10:56 2022