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LOCUS	    FJ030685		    1050 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_133_1_7371 from Italy pol protein (pol) gene,
	    partial cds
ACCESSION   FJ030685
VERSION     FJ030685.1 GI:226373948
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1050)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 1050)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..1050
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_133_1_7371"
		     /db_xref="taxon:11676"
		     /country="Italy"
		     /collection_date="2002"
     gene	     <1..>1050
		     /gene="pol"
     CDS	     <1..>1050
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52200.1"
		     /db_xref="GI:226373949"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDINLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFSPI
		     EAVPVILKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGXISKIGPENPYNTPVFAI
		     KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
		     KDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQXPDIV
		     IYQYMXDLYVGSDLEIGQHXTKVEELRXHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
		     KWTVQPILLPEKDSWT"
BASE COUNT	401 a	 176 c	  215 g    245 t     13 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggagg gcaactaaag 
      61 gaagctctrt tagatacagg agcagatgat acagtattag aagatataaa tttrccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctataggta cagtrttagt aggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg actcagcttg gttgcacttt aaattttagt 
     301 cctattgaag ctgtaccagt aatattaaag ccaggaatgg atggcccaaa agttaaacaa 
     361 tggccattga cagaagaaaa aataaaagca ttagtagaaa tttgtacaga aatggaaaag 
     421 gaagggaama tttcaaaaat tgggcctgaa aatccataca atactccagt atttgccata 
     481 aagaaaaaag acagtactaa atggagaaaa ttagtagatt tcagagaact taataagaga 
     541 actcaagact tctgggaagt wcaaytagga ataccacatc ccgcagggtt aaaaaagaaa 
     601 aaatcagtma cagtactgga tgtgggtgat gcatattttt cagttccytt agataaagac 
     661 ttcaggaagt atactgcatt caccatacct agtacaaaca atgagacacc agggattaga 
     721 tatcagtaca atgtgcttcc acagggatgg aaaggatcac cagcaatatt ccaaagtagc 
     781 atgacaaaaa tcttagagcc ctttagaaaa caawatccag acatagttat ctatcaatac 
     841 atgkatgayt tgtatgtagg atctgactta gaaatagggc agcatagwac aaaagtagag 
     901 gaactgagac amcatctgtt gaagtgggga tttaccacac cagacaaaaa acatcagaaa 
     961 gaacctccat tcctttggat gggttatgaa ctccatcctg ataaatggac agtacagccc 
    1021 atattgctgc ccgaaaaaga cagctggacg 
//
last modified: Tue May 31 10:56 2022


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