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LOCUS FJ030680 1176 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_1317_4_1218 from Italy pol protein (pol) gene,
partial cds
ACCESSION FJ030680
VERSION FJ030680.1 GI:226373938
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1176)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1176)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1176
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_1317_4_1218"
/db_xref="taxon:11676"
/country="Italy"
/collection_date="2000"
gene <1..>1176
/gene="pol"
CDS <1..>1176
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52195.1"
/db_xref="GI:226373939"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
KMIGGIGGFIKVRQYDQVAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
LDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLSWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTEVV
"
BASE COUNT 453 a 187 c 258 g 278 t
ORIGIN
1 cctcagatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caggtagcca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg ggtgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaagtt
361 aagcaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg
421 gaaaaggaag ggaagatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc aggattaaaa
601 aagaagaaat cagtaacagt actggatgtg ggtgatgcat atttttcaat tcccttagat
661 aaagagttca ggaagtatac tgcatttacc atacctagta caaataatga gacaccaggg
721 atcagatatc agtacaatgt acttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaagcaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcaaca tagaataaaa
901 atagaggaac tgagacaaca tctgttaagc tgggggttaa ccacaccaga taagaagcat
961 cagaaagagc ctccattcct ctggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaggacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaggca attatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtagta
//
last modified: Tue May 31 10:56 2022