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LOCUS	    FJ030680		    1176 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_1317_4_1218 from Italy pol protein (pol) gene,
	    partial cds
ACCESSION   FJ030680
VERSION     FJ030680.1 GI:226373938
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1176)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 1176)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..1176
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_1317_4_1218"
		     /db_xref="taxon:11676"
		     /country="Italy"
		     /collection_date="2000"
     gene	     <1..>1176
		     /gene="pol"
     CDS	     <1..>1176
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52195.1"
		     /db_xref="GI:226373939"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKP
		     KMIGGIGGFIKVRQYDQVAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
		     LDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLSWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTEVV
		     "
BASE COUNT	453 a	 187 c	  258 g    278 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caggtagcca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg ggtgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaagtt 
     361 aagcaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaagatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc aggattaaaa 
     601 aagaagaaat cagtaacagt actggatgtg ggtgatgcat atttttcaat tcccttagat 
     661 aaagagttca ggaagtatac tgcatttacc atacctagta caaataatga gacaccaggg 
     721 atcagatatc agtacaatgt acttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaagcaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcaaca tagaataaaa 
     901 atagaggaac tgagacaaca tctgttaagc tgggggttaa ccacaccaga taagaagcat 
     961 cagaaagagc ctccattcct ctggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaggacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaggca attatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtagta
//
last modified: Tue May 31 10:56 2022


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