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LOCUS EU908750 839 bp RNA linear VRL 23-SEP-2008
DEFINITION HIV-1 isolate pt6W12 from Italy integrase (pol) gene, partial cds
ACCESSION EU908750
VERSION EU908750.1 GI:204304586
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 839)
Show all sequences for reference 1
AUTHORS Canducci,F., Sampaolo,M., Marinozzi,M.C., Boeri,E., Spagnuolo,V.,
Galli,A., Castagna,A., Lazzarin,A., Clementi,M. and Gianotti,N.
TITLE Dynamic patterns of human immunodeficiency virus type 1 integrase
gene evolution in patients failing raltegravir-based salvage
therapies.
JOURNAL AIDS. 23(4); 455-60 (2009)
PUBMED 19165083
REFERENCE 2 (bases 1 to 839)
Show all sequences for reference 2
AUTHORS Canducci,F., Sampaolo,M., Marinozzi,M.C., Boeri,E. and Clementi,M.
TITLE Direct Submission
JOURNAL Submitted (17-JUL-2008) Laboratory of Microbiology and Virology,
University Vita-salute San Raffaele, via Olgettina 58, Milan 20132,
Italy
FEATURES Location/Qualifiers
source 1..839
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="pt6W12"
/db_xref="taxon:11676"
/country="Italy"
/collection_date="Oct-2007"
gene <1..>839
/gene="pol"
CDS <1..>839
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACH99140.1"
/db_xref="GI:204304587"
/translation="VDKLVSNGIRRVLFLNGIDKAQEEHEKYHSNWRAMASDFNLPPV
VAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVI
PAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFSIPYNPQS
RGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIA
TDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRR
KAK"
BASE COUNT 334 a 128 c 196 g 181 t
ORIGIN
1 gtagataaat tagtcagtaa tggaatcagg agagtactat ttttaaatgg aatagataaa
61 gcccaagaag aacatgagaa atatcacagt aattggagag caatggctag tgattttaac
121 ctgccacctg tggtagcaaa agagatagta gccagctgtg ataaatgtca gctaaaagga
181 gaagccatgc atggacaagt agactgtagt ccaggaatat ggcaactaga ttgtacacat
241 ctagaaggaa aaattatcct ggtagcagtt catgtagcca gtggatatat agaagcagaa
301 gttattccag cagaaacagg gcaggaaaca gcatacttta tcttaaagtt agcaggaaga
361 tggccagtaa aaacaataca tacagacaat ggcagcaatt tcaccagtac tactgttaag
421 gccgcctgtt ggtgggcagg gatcaagcag gaatttagta ttccctacaa tccccaaagt
481 cgaggagtag tagaatccat gaataatgaa ttaaagaaaa ttataggaca agtaagagat
541 caggctgaac atcttaagac agcagtacaa atggcagtat tcatccacaa ttttaaaaga
601 aaagggggga ttggggggta cagtgcaggg gaaagaatag tagacataat agcaacagac
661 ctacaaacta aggaactaca aaaacaaatt acaaaaattc aaaattttcg ggtttattac
721 agggacagca gagatccact ttggaaagga ccagcaaaac ttctttggaa aggtgaaggg
781 gcagtagtaa tacaagataa tagtgacata aaagtagtac caagaagaaa agcaaagat
//
last modified: Tue May 31 10:56 2022