View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EU863436 2541 bp RNA linear VRL 18-AUG-2008
DEFINITION HIV-1 isolate 541-18-0 from South Africa envelope glycoprotein
(env) gene, partial cds
ACCESSION EU863436
VERSION EU863436.1 GI:196051373
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2541)
Show all sequences for reference 1
AUTHORS Rademeyer,C., Moore,P.L., Taylor,N., Martin,D.P., Choge,I.A.,
Gray,E.S., Sheppard,H.W., Gray,C., Morris,L. and Williamson,C.
TITLE Genetic characteristics of HIV-1 subtype C envelopes inducing
cross-neutralizing antibodies.
JOURNAL Virology. 368(1); 172-81 (2007)
PUBMED 17632196
REFERENCE 2 (bases 1 to 2541)
Show all sequences for reference 2
AUTHORS Rademeyer,C., Moore,P. and Williamson,C.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2008) Medical Virology, University of Cape Town,
S3.25 Wehner Beit South, Anzio Road, Observatory, Cape Town,
Western Cape 7925, South Africa
FEATURES Location/Qualifiers
source 1..2541
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="541-18-0"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2000"
/note="subtype: C"
gene <1..2541
/gene="env"
CDS <1..2541
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACG68841.1"
/db_xref="GI:196051374"
/translation="WGIWGILGFWICNVVGNLWVTVYYGVPVWEEANTTLFCASDAKA
YEREVHNVWATHACVPTDPDPQELVLENVTENFNMWKNDMVNQMHEDIISIWDQSLKP
CVKLTPLCVTLXCTNVNKNSTTADNNSTVTNDTKIKNCSFKVPTEITDKMHKELALYY
DLDVIPLKADGNSNNGEGSSNDSYRLINCNTSVIKQACPKVSFDPIPIHYCAPAGYAI
LKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSKNMSDNVQT
IIVHLNEXVKIECARPNNNTRKSIRIGPGQTFYATGDIIGDIRKAHCNISESKWNKTL
QGVVEKLRKHFPNKTIKFSQSSGGDLEITRHSFNCRGEFFYCDTSKLFNSTFQPNSTK
NDTTITLQCRIKQIINMWQEVGRAIYAPPIAGNITCISNITGLLLTRDGGNETGNTEI
FRPGGGDMKDNWRSELYKYKVVKIKPLGVAPTKAKRRVVEREKRAVGIGAVLLGFLGA
AGSTMGAASITLTVQARQVLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQARVLAI
ERYLKDQQLLGLWGCSGKLICTTTVPWNSSWSNKSQTDIWDNMTWMQWDKEINNYTNT
IYKLLEDSQTQQEQNEKDLLALDSWNNLWNWFSITKWLWYIKLFIMIVGGLIGLRIIF
AVLSIVNRVRQGYSPLSFQTLTPNQWGPDRLGRIAEEGGEQDRDRSVRLVSGFLAIAW
DDLRNLCLFCYRLLRDFILIAARAAELLGRSSLRGLQRGWEALKYLGSLVQYWGLELK
KSAISLFNAIAIAVAEGTDRIIELIQNICRGIYNIPRRIRQGFEAALQ"
BASE COUNT 893 a 435 c 593 g 617 t 3 other
ORIGIN
1 tgggggatat ggggcatctt aggcttttgg atttgtaatg tggtagggaa cttgtgggtc
61 acagtttatt atggagtacc tgtgtgggaa gaggcaaaca ccactctctt ctgtgcatca
121 gatgctaaag catatgagag agaagtgcat aatgtatggg ccacacatgc ctgtgtaccc
181 acagaccccg acccacaaga attagttttg gaaaatgtaa cagaaaattt taacatgtgg
241 aaaaatgaca tggtgaatca gatgcatgag gatataatca gtatatggga tcaaagccta
301 aagccatgtg taaagttgac cccactctgt gtcactttaa mctgtacaaa tgttaacaaa
361 aatagtacta ctgccgacaa taatagtact gttaccaatg atacwaaaat aaaaaattgc
421 tctttcaagg tacccacaga gataacagat aagatgcata aggagcttgc actttattat
481 gatcttgatg ttataccact taaggcggat ggcaatagta ataacgggga ggggagtagt
541 aatgacagct atagattaat aaattgtaat acctcagtca taaaacaagc ctgtccaaag
601 gtctcttttg acccaattcc tatacattat tgtgctccag ctggttatgc gattctaaag
661 tgtaataata agacattcaa tggaacagga ccttgcaata atgtcagcac agtacaatgt
721 acacatggaa ttaagccagt ggtatcaact cagctactgt taaatggtag cctagcagaa
781 ggagagataa taatcaggtc taaaaacatg tcagacaatg tccaaacaat aatagtacat
841 cttaatgaay ctgtaaaaat tgagtgtgca agacccaaca ataatacaag aaaaagtata
901 aggataggac caggacagac attctatgca acaggagaca taataggaga cataagaaaa
961 gcacattgta acattagtga aagtaaatgg aataaaactt tacaaggagt agttgaaaaa
1021 ttaagaaaac actttcctaa taaaacaata aaatttagtc aatcctcagg aggggaccta
1081 gaaattacaa ggcatagttt taattgtaga ggagaatttt tctattgcga tacatcaaaa
1141 ctgtttaata gtacattcca gcctaatagt acaaaaaatg atacaaccat cacactccaa
1201 tgcagaataa agcaaattat aaacatgtgg caggaggtag gacgagcaat atacgcccct
1261 cccattgcag gaaacataac atgtatatca aatatcacag gactactatt gacacgtgat
1321 ggaggaaatg aaacaggtaa cacagagata ttcagacctg gaggaggaga tatgaaggac
1381 aattggagaa gtgaattata taaatataaa gtggtaaaaa ttaagccatt aggagtagca
1441 cccactaagg caaaaaggag agtggtggag agagaaaaaa gagcagtggg aataggagct
1501 gtactccttg ggttcttggg agcagccgga agcactatgg gcgcggcgtc aataacgctg
1561 acggtacagg ccagacaagt attgtctggt atagtgcaac agcaaagcaa tttgctgagg
1621 gctatagagg cgcaacagca tatgttgcaa ctcacagtct ggggcattaa gcagctccag
1681 gcaagagtcc tggctataga aagataccta aaggatcaac agctcctagg gctttggggc
1741 tgctctggaa aactcatctg caccactacc gtgccttgga actccagttg gagtaataaa
1801 tctcaaacag atatttggga taacatgacc tggatgcagt gggataaaga gattaataac
1861 tacacaaaca caatatacaa gttgcttgaa gactcgcaaa cccagcagga acaaaatgaa
1921 aaagatttat tagcattgga cagttggaac aatctgtgga attggtttag cataacaaag
1981 tggctgtggt atataaaatt attcataatg atagtaggag gcttgatagg tttaagaata
2041 atttttgctg tgctttctat agtgaataga gttaggcagg gatactcacc tctgtcgttt
2101 cagaccctta ccccgaacca gtggggaccc gacaggctcg gaagaatcgc agaagaaggt
2161 ggagagcaag acagagacag atctgtgcgc ttagtgagcg gattcttagc tattgcctgg
2221 gacgatctgc ggaacctgtg cctcttctgc taccgcctat tgagagactt catattgatt
2281 gcagcgaggg cggcggaact tctgggacgc agcagtctca ggggactaca gagggggtgg
2341 gaagccctta agtatttggg aagtcttgtg cagtattggg gtctggaact aaaaaagagt
2401 gctattagtc tgtttaatgc catagcaata gcagtagctg aaggaacaga taggattata
2461 gaattaatac aaaatatttg tagaggtatc tacaacatac ccagaagaat aagacaggga
2521 tttgaagcag ctttgcagta a
//
last modified: Tue May 31 10:56 2022