View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EU850296 414 bp DNA linear VRL 11-AUG-2009
DEFINITION HIV-1 isolate 7 from Uganda envelope glycoprotein (env) gene,
partial cds
ACCESSION EU850296
VERSION EU850296.1 GI:212524211
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 414)
Show all sequences for reference 1
AUTHORS Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
and Quinn,T.C.
TITLE HIV subtype D is associated with dementia, compared with subtype A,
in immunosuppressed individuals at risk of cognitive impairment in
Kampala, Uganda
JOURNAL Clin. Infect. Dis. 49 (5), 780-786 (2009)
PUBMED 19622045
REFERENCE 2 (bases 1 to 414)
Show all sequences for reference 2
AUTHORS Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
and Quinn,T.C.
TITLE Direct Submission
JOURNAL Submitted (24-JUN-2008) Department of Neurology, Johns Hopkins
Bayview Medical Center, 4940 Eastern Ave, B. Bldg, Rm 123,
Baltimore, MD 21224, USA
FEATURES Location/Qualifiers
source 1..414
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="7"
/isolation_source="female patient with Memorial Sloan
Kettering Dementia Scale (MKS) 2"
/db_xref="taxon:11676"
/country="Uganda: Kampala"
/note="samples were collected from Sept. 2005 to Jan. 2007
subtype: D/A1"
gene <1..>414
/gene="env"
CDS <1..>414
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACJ26589.1"
/db_xref="GI:212524212"
/translation="SGIVQQQSNLLRAIEAQQQLLRLTVWGIKQLQARVLAVERYLKD
QQLLGIWGCSGKLICATNVPWNSSWSNRSQVEIWENMTWMQWEREIDNYTGFIYSLIE
ESQNQQEINEKDLLALDKWANLWSWFNITNWLWYIK"
BASE COUNT 138 a 71 c 104 g 101 t
ORIGIN
1 tctggcatag tgcaacagca aagcaatttg ctgagggcta tagaggctca gcagcaactg
61 ttgagactca cagtctgggg cattaaacag ctccaggcaa gagtcctggc tgtggaaaga
121 tacctaaagg atcaacagct cctaggaatt tggggttgct ctggaaaact tatttgcgcc
181 actaacgtgc cttggaacag tagttggagc aataggtccc aagttgaaat ttgggaaaac
241 atgacctgga tgcagtggga acgagaaatt gacaattaca caggtttcat atacagctta
301 attgaagaat cgcaaaacca gcaagaaatt aatgaaaaag accttttggc attggataaa
361 tgggcaaact tgtggagttg gtttaatata acaaattggc tgtggtatat aaaa
//
last modified: Tue May 31 10:56 2022