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LOCUS	    EU841460		     630 bp    DNA     linear	VRL 15-SEP-2008
DEFINITION  HIV-1 isolate 55 from Uganda gag protein (gag) gene, partial cds
ACCESSION   EU841460
VERSION     EU841460.1 GI:198444031
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
	    Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
	    and Quinn,T.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2008) Department of Neurology, Johns Hopkins
	    Bayview Medical Center, 4940 Eastern Ave., B Bldg. Rm. 123,
	    Baltimore, MD 21224, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
	    Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
	    and Quinn,T.C.
  TITLE     HIV subtype D is associated with dementia, compared with subtype A,
	    in immunosuppressed individuals at risk of cognitive impairment in
	    Kampala, Uganda
  JOURNAL   Clin. Infect. Dis. 49 (5), 780-786 (2009)
  PUBMED    19622045
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="55"
		     /isolation_source="female patient"
		     /db_xref="taxon:11676"
		     /country="Uganda: Kampala"
		     /note="collected between Sep-2005 and Jan-2007; Memorial
		     Sloan Kettering Dementia Scale (MSK) = 0.5 subtype: A1/D"
     gene	     <1..>630
		     /gene="gag"
     CDS	     <1..>630
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACH88198.1"
		     /db_xref="GI:198444032"
		     /translation="SPEVIPMFSALSEGATPQDLNTMLNAVGGHQAAMQMLKETINEE
		     AAEWDRLHPVQAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWI
		     ILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQ
		     NANPDCKNILKALGSGATLEEMMTACQGVGGPSHKARVLAEAMSQAQQAN"
BASE COUNT	237 a	 120 c	  149 g    124 t
ORIGIN
       1 agcccagaag taatacccat gttttcagca ttatcagaag gagccacccc acaagattta 
      61 aacaccatgc taaatgcagt ggggggacat caagcagcta tgcaaatgtt aaaagaaacc 
     121 atcaatgagg aagctgcaga atgggatagg ctacatccag tgcaggcagg acctattgca 
     181 ccaggccaaa tgagagaacc aaggggaagt gatatagcag gaactactag tacccttcag 
     241 gaacaaatag gatggatgac aagtaatcca cctatcccag taggagaaat ctataaaaga 
     301 tggataatcc taggattaaa taaaatagta agaatgtata gccctgtcag cattttggac 
     361 ataagacaag gaccaaagga accctttaga gattatgtag atcggttcta taaaactttg 
     421 agagccgagc aagctacaca ggaagtaaaa aattggatga ccgaaacctt gttggtccaa 
     481 aatgcgaacc cagattgtaa aaatatctta aaagcattag gatcaggggc tacattagaa 
     541 gaaatgatga cagcatgcca gggagtggga ggacccagcc ataaagcacg ggttttagct 
     601 gaggcaatga gtcaagcaca acaggcaaac 
//
last modified: Tue May 31 10:56 2022


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