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LOCUS EU841445 630 bp DNA linear VRL 15-SEP-2008
DEFINITION HIV-1 isolate 40 from Uganda gag protein (gag) gene, partial cds
ACCESSION EU841445
VERSION EU841445.1 GI:198444001
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 630)
Show all sequences for reference 1
AUTHORS Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
and Quinn,T.C.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2008) Department of Neurology, Johns Hopkins
Bayview Medical Center, 4940 Eastern Ave., B Bldg. Rm. 123,
Baltimore, MD 21224, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
and Quinn,T.C.
TITLE HIV subtype D is associated with dementia, compared with subtype A,
in immunosuppressed individuals at risk of cognitive impairment in
Kampala, Uganda
JOURNAL Clin. Infect. Dis. 49 (5), 780-786 (2009)
PUBMED 19622045
FEATURES Location/Qualifiers
source 1..630
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="40"
/isolation_source="female patient"
/db_xref="taxon:11676"
/country="Uganda: Kampala"
/note="collected between Sep-2005 and Jan-2007; Memorial
Sloan Kettering Dementia Scale (MSK) = 0 subtype: A1"
gene <1..>630
/gene="gag"
CDS <1..>630
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ACH88183.1"
/db_xref="GI:198444002"
/translation="SPEVIPMFAALSEGAVPQDLNMMMNIVGGHQAAMQMLKDTINEE
AAEWDRTHPVQAGPIPPNQLREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWI
ILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKTLRAEQASQEVKGWMTDTLIVQ
NANPDCKSILRALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQAQQTN"
BASE COUNT 229 a 123 c 156 g 122 t
ORIGIN
1 agcccagaag taatacccat gtttgcagcg ttatcagaag gagccgtccc acaagattta
61 aatatgatga tgaacatagt ggggggacat caggcagcca tgcaaatgtt aaaggatacc
121 atcaatgagg aagctgcaga atgggacagg acacatccag tacaggcagg gcccattcca
181 ccaaatcagc tgagagaacc aaggggaagt gatatagcag gaactactag tacccttcaa
241 gaacaaatag gatggatgac aagcaatcca cctatcccag tgggagaaat ctataaaaga
301 tggataatcc tgggattaaa taaaatagta agaatgtata gccctgttag cattttggac
361 ataaagcaag ggccaaaaga gcccttcaga gactatgtag ataggttctt taaaactctc
421 agagccgaac aagcttcaca ggaggtaaaa ggttggatga cagacacctt gatagtccaa
481 aatgcaaatc cagattgtaa gtccatctta agagcattag gaccaggggc tacattagaa
541 gaaatgatga cagcatgcca gggagtggga ggacccagcc ataaggcaag ggttttagct
601 gaggcaatga gtcaagcaca acagacaaac
//
last modified: Tue May 31 10:56 2022