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LOCUS	    EU841445		     630 bp    DNA     linear	VRL 15-SEP-2008
DEFINITION  HIV-1 isolate 40 from Uganda gag protein (gag) gene, partial cds
ACCESSION   EU841445
VERSION     EU841445.1 GI:198444001
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
	    Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
	    and Quinn,T.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2008) Department of Neurology, Johns Hopkins
	    Bayview Medical Center, 4940 Eastern Ave., B Bldg. Rm. 123,
	    Baltimore, MD 21224, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
	    Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
	    and Quinn,T.C.
  TITLE     HIV subtype D is associated with dementia, compared with subtype A,
	    in immunosuppressed individuals at risk of cognitive impairment in
	    Kampala, Uganda
  JOURNAL   Clin. Infect. Dis. 49 (5), 780-786 (2009)
  PUBMED    19622045
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="40"
		     /isolation_source="female patient"
		     /db_xref="taxon:11676"
		     /country="Uganda: Kampala"
		     /note="collected between Sep-2005 and Jan-2007; Memorial
		     Sloan Kettering Dementia Scale (MSK) = 0 subtype: A1"
     gene	     <1..>630
		     /gene="gag"
     CDS	     <1..>630
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACH88183.1"
		     /db_xref="GI:198444002"
		     /translation="SPEVIPMFAALSEGAVPQDLNMMMNIVGGHQAAMQMLKDTINEE
		     AAEWDRTHPVQAGPIPPNQLREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWI
		     ILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKTLRAEQASQEVKGWMTDTLIVQ
		     NANPDCKSILRALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQAQQTN"
BASE COUNT	229 a	 123 c	  156 g    122 t
ORIGIN
       1 agcccagaag taatacccat gtttgcagcg ttatcagaag gagccgtccc acaagattta 
      61 aatatgatga tgaacatagt ggggggacat caggcagcca tgcaaatgtt aaaggatacc 
     121 atcaatgagg aagctgcaga atgggacagg acacatccag tacaggcagg gcccattcca 
     181 ccaaatcagc tgagagaacc aaggggaagt gatatagcag gaactactag tacccttcaa 
     241 gaacaaatag gatggatgac aagcaatcca cctatcccag tgggagaaat ctataaaaga 
     301 tggataatcc tgggattaaa taaaatagta agaatgtata gccctgttag cattttggac 
     361 ataaagcaag ggccaaaaga gcccttcaga gactatgtag ataggttctt taaaactctc 
     421 agagccgaac aagcttcaca ggaggtaaaa ggttggatga cagacacctt gatagtccaa 
     481 aatgcaaatc cagattgtaa gtccatctta agagcattag gaccaggggc tacattagaa 
     541 gaaatgatga cagcatgcca gggagtggga ggacccagcc ataaggcaag ggttttagct 
     601 gaggcaatga gtcaagcaca acagacaaac 
//
last modified: Tue May 31 10:56 2022


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