HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EU700609		     933 bp    DNA     linear	VRL 09-JUN-2008
DEFINITION  HIV-1 clone Patient002_Time2_EFFECTOR_MEMORY_CLONE12 from Canada
	    envelope glycoprotein (env) gene, partial cds
ACCESSION   EU700609
VERSION     EU700609.1 GI:189344044
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 933)
            Show all sequences for reference 1
  AUTHORS   Chomont,N., El-Far,M., Ancuta,P., Trautmann,L., Procopio,F.A.,
	    Yassine-Diab,B., Boucher,G., Boulassel,M.-R., Ghattas,G.,
	    Brenchley,J.M., Schacker,T.W., Hill,B.J., Douek,D.C., Routy,J.-P.,
	    Haddad,E.K. and Sekaly,R.-P.
  TITLE     HIV reservoir size and persistence are driven by T cell survival
	    and homeostatic proliferation.
  JOURNAL   Nat. Med.. 15(8); 893-900 (2009)
  PUBMED    19543283
REFERENCE   2 (bases 1 to 933)
            Show all sequences for reference 2
  AUTHORS   Chomont,N., El Far,M., Ancuta,P., Trautmann,L., Procopio,F.A.,
	    Yassine-Diab,B., Boucher,G., Boulassel,M.-R., Routy,J.-P.,
	    Haddad,E.K. and Sekaly,R.-P.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2008) Laboratoire d''Immunologie, Universite de
	    Montreal, 264, Rene Levesque Est, Montreal, Quebec H2X1P1, Canada
FEATURES             Location/Qualifiers
     source	     1..933
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="Patient002_Time2_EFFECTOR_MEMORY_CLONE12"
		     /country="Canada"
		     /collection_date="03-Mar-2006"
     gene	     <1..>933
		     /gene="env"
		     /gene_synonym="gp120"
     CDS	     <1..>933
		     /gene="env"
		     /gene_synonym="gp120"
		     /note="V1-V3 region"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACD92391.1"
		     /db_xref="GI:189344045"
		     /translation="ATHACVPTDPNPQEVVLGNVTENFNMWKNNMVEQMQEDIISLWD
		     QSLKPCVKLTPLCVTLNCTEVQKGTNNTNSSLGMMKEEMKNCSFNITTSIKDKMKKEY
		     ALFYSLDVVPIDRNNTRYRLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNK
		     TFNGKGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEETVIRSSNFSDNAKTIIVQLN
		     NFVEINCTRPNDNTRKSIPMGPGKAFYATGDITGDIRQAHCNLSRGKWNNTLSTIVIK
		     LREQFGNKTIVFNQASGGDLEIVMHSFNCGGEFF"
BASE COUNT	358 a	 157 c	  187 g    231 t
ORIGIN
       1 gggccacaca tgcctgtgta cccacagacc ccaacccaca agaagtagta ttgggaaatg 
      61 tgacagaaaa ttttaacatg tggaaaaata acatggtaga acagatgcag gaggatataa 
     121 tcagtttatg ggatcaaagc ctaaagccat gtgtaaaatt aaccccactc tgtgttactt 
     181 taaattgcac tgaggtgcag aaaggtacta ataacaccaa tagtagtttg ggaatgatga 
     241 aggaagaaat gaaaaactgc tctttcaata tcaccacaag cataaaagat aagatgaaga 
     301 aagaatatgc acttttttat agccttgatg tagtaccaat agatagaaat aataccagat 
     361 ataggttgat aaattgtaac acctcagtca ttacacaggc ctgtccaaag gtatcctttg 
     421 agccaattcc catacattat tgtgccccag ctggttttgc gattctaaag tgtaacaata 
     481 agacattcaa tggaaaagga ccatgtacaa atgtaagcac agtacaatgt acacatggaa 
     541 ttaggccagt agtgtcaact caactgctgt taaatggcag tctagcagaa gaagagacag 
     601 taattagatc cagcaatttc tcggacaatg ccaaaaccat aatagtacag ctcaataatt 
     661 ttgtagaaat taattgtaca agacccaacg acaatacaag aaagagtata cctatgggac 
     721 cagggaaagc attttatgca acaggagata taacaggaga tataagacaa gcacattgta 
     781 accttagtag aggaaaatgg aataacactt taagcacgat agttataaaa ttaagagaac 
     841 agtttgggaa taaaacaata gtctttaatc aagcctcagg aggggaccta gaaattgtaa 
     901 tgcacagttt taattgtgga ggggaatttt tct
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health