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LOCUS EU698135 1065 bp RNA linear VRL 03-JUN-2008
DEFINITION HIV-1 isolate 20494SASA3805XXxxxxxiDDDD1pcJS24XXXX from South
Africa gag protein (gag) gene, partial cds
ACCESSION EU698135
VERSION EU698135.1 GI:189172755
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1065)
Show all sequences for reference 1
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE HLA class I-driven evolution of human immunodeficiency virus type 1
subtype c proteome: immune escape and viral load.
JOURNAL J. Virol.. 82(13); 6434-46 (2008)
PUBMED 18434400
REFERENCE 2 (bases 1 to 1065)
Show all sequences for reference 2
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2008) Dept of Microbiology, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..1065
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="20494SASA3805XXxxxxxiDDDD1pcJS24XXXX"
/isolation_source="29354 patient_id 3805 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
gene 1..>1065
/gene="gag"
CDS 1..>1065
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ACD80625.1"
/db_xref="GI:189172756"
/translation="MGARASILRGEKLDTWETIRLRPGGKKTYKLKHIVWASRELERF
ALNPGLLETSEGCKQIIRQLQPALQTGTEELKSLFNTVATLYCVHEKIKVRDTKEALD
KIEEEQNKSQQKTQQVKAADGKVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKA
FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAG
PIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGDIYKRWIILGLNKIVRMYSP
VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRAL
GPGATLEEMMTACQGVGGPGH"
BASE COUNT 406 a 197 c 251 g 211 t
ORIGIN
1 atgggtgcga gagcgtcaat attaagaggg gaaaaattag atacatggga aacaattagg
61 ttaaggccag ggggaaagaa aacctataag ttaaaacaca tagtatgggc aagcagggag
121 ctggaaagat ttgcacttaa ccctggcctt ttggaaacat cagaaggctg taaacaaata
181 ataagacagc tacaaccagc tcttcagaca ggaacagagg aacttaaatc attattcaac
241 acagtagcaa ctctctattg tgtacatgaa aagataaagg tacgagacac caaggaagcc
301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggtaaaagcg
361 gctgacggaa aggtcagtca aaattaccct atagtgcaaa atctccaagg gcaaatggta
421 catcaagcca tatcacctag aaccttgaat gcatgggtaa aagtaataga ggagaaggct
481 tttagcccag aggtaatacc catgtttaca gcattatcag aaggagccac cccacaagat
541 ttaaacacca tgttaaatac ggtgggggga catcaagcag ccatgcaaat gttaaaagat
601 accatcaatg aagaggctgc agaatgggat agattacacc cagtacatgc agggcctatt
661 gcaccaggcc aaatgagaga accaagggga agtgacatag caggaactac tagtaccctt
721 caggaacaaa tagcatggat gacaagtaac ccacctattc cagtgggaga catctataaa
781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcattttg
841 gacataagac aagggccaaa ggaacccttt agagactatg tagaccggtt ctttaaaact
901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagatac cttgttggtc
961 caaaatgcga acccagattg taagaccatt ttaagagcct taggaccagg ggctacatta
1021 gaagaaatga tgacagcatg tcagggagtg ggaggacctg gccac
//
last modified: Tue May 31 10:56 2022