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LOCUS	    EU698135		    1065 bp    RNA     linear	VRL 03-JUN-2008
DEFINITION  HIV-1 isolate 20494SASA3805XXxxxxxiDDDD1pcJS24XXXX from South
	    Africa gag protein (gag) gene, partial cds
ACCESSION   EU698135
VERSION     EU698135.1 GI:189172755
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1065)
            Show all sequences for reference 1
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     HLA class I-driven evolution of human immunodeficiency virus type 1
	    subtype c proteome: immune escape and viral load.
  JOURNAL   J. Virol.. 82(13); 6434-46 (2008)
  PUBMED    18434400
REFERENCE   2 (bases 1 to 1065)
            Show all sequences for reference 2
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2008) Dept of Microbiology, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..1065
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="20494SASA3805XXxxxxxiDDDD1pcJS24XXXX"
		     /isolation_source="29354 patient_id 3805 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
     gene	     1..>1065
		     /gene="gag"
     CDS	     1..>1065
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACD80625.1"
		     /db_xref="GI:189172756"
		     /translation="MGARASILRGEKLDTWETIRLRPGGKKTYKLKHIVWASRELERF
		     ALNPGLLETSEGCKQIIRQLQPALQTGTEELKSLFNTVATLYCVHEKIKVRDTKEALD
		     KIEEEQNKSQQKTQQVKAADGKVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKA
		     FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAG
		     PIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGDIYKRWIILGLNKIVRMYSP
		     VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRAL
		     GPGATLEEMMTACQGVGGPGH"
BASE COUNT	406 a	 197 c	  251 g    211 t
ORIGIN
       1 atgggtgcga gagcgtcaat attaagaggg gaaaaattag atacatggga aacaattagg 
      61 ttaaggccag ggggaaagaa aacctataag ttaaaacaca tagtatgggc aagcagggag 
     121 ctggaaagat ttgcacttaa ccctggcctt ttggaaacat cagaaggctg taaacaaata 
     181 ataagacagc tacaaccagc tcttcagaca ggaacagagg aacttaaatc attattcaac 
     241 acagtagcaa ctctctattg tgtacatgaa aagataaagg tacgagacac caaggaagcc 
     301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggtaaaagcg 
     361 gctgacggaa aggtcagtca aaattaccct atagtgcaaa atctccaagg gcaaatggta 
     421 catcaagcca tatcacctag aaccttgaat gcatgggtaa aagtaataga ggagaaggct 
     481 tttagcccag aggtaatacc catgtttaca gcattatcag aaggagccac cccacaagat 
     541 ttaaacacca tgttaaatac ggtgggggga catcaagcag ccatgcaaat gttaaaagat 
     601 accatcaatg aagaggctgc agaatgggat agattacacc cagtacatgc agggcctatt 
     661 gcaccaggcc aaatgagaga accaagggga agtgacatag caggaactac tagtaccctt 
     721 caggaacaaa tagcatggat gacaagtaac ccacctattc cagtgggaga catctataaa 
     781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcattttg 
     841 gacataagac aagggccaaa ggaacccttt agagactatg tagaccggtt ctttaaaact 
     901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagatac cttgttggtc 
     961 caaaatgcga acccagattg taagaccatt ttaagagcct taggaccagg ggctacatta 
    1021 gaagaaatga tgacagcatg tcagggagtg ggaggacctg gccac
//
last modified: Tue May 31 10:56 2022


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