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LOCUS EU698133 1080 bp RNA linear VRL 03-JUN-2008
DEFINITION HIV-1 isolate 20492SASA3804XXxxxxxiDDDD1pcJS24XXXX from South
Africa gag protein (gag) gene, partial cds
ACCESSION EU698133
VERSION EU698133.1 GI:189172751
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1080)
Show all sequences for reference 1
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE HLA class I-driven evolution of human immunodeficiency virus type 1
subtype c proteome: immune escape and viral load.
JOURNAL J. Virol.. 82(13); 6434-46 (2008)
PUBMED 18434400
REFERENCE 2 (bases 1 to 1080)
Show all sequences for reference 2
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2008) Dept of Microbiology, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..1080
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="20492SASA3804XXxxxxxiDDDD1pcJS24XXXX"
/isolation_source="29353 patient_id 3804 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
gene 1..>1080
/gene="gag"
CDS 1..>1080
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ACD80623.1"
/db_xref="GI:189172752"
/translation="MGARASVLRGEKLDTWEKIRLRPGGRKKYRLKHIVWASRELERF
ALNPGLLETSEGCKQIMAQLQPALQTGTEEIKSLFNTVATLYCVHRRIEVQDTKEALD
KIEEEQNKSQQKAQSQKAQQAKAADGTVSQNYPIVQNLQGQMVHQAISPRTLNAWVKV
IEEKAFSPEVIPMFTALSDGATPQDLNAMLNTVGGHQAAMQMLKDTINEEAAEWDRLH
PVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGDIYKRWIILGLNKIV
RMYSPVSILDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKT
ILRALGPGASLEEMMTACQGVGGPGH"
BASE COUNT 408 a 200 c 261 g 211 t
ORIGIN
1 atgggtgcga gagcgtcagt attaagaggc gaaaaattag atacatggga aaaaattagg
61 ttaaggccag ggggaaggaa aaaatataga ttaaaacaca tagtatgggc aagcagggag
121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg taaacagatc
181 atggcacagc tacaaccagc tcttcagaca ggaacagagg aaattaaatc attattcaac
241 acagtagcaa ctctctattg tgtacataga aggatagagg tacaagacac caaggaagcc
301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aagcacaaag tcagaaagca
361 cagcaggcaa aagcggctga cggaacagtc agtcaaaatt atcctatagt gcagaatctc
421 caagggcaaa tggtacatca ggccatatca cctagaacat tgaatgcatg ggtaaaagta
481 atagaggaga aagcttttag cccagaggta atacccatgt ttacagcatt atcagatgga
541 gccaccccac aagatttaaa tgccatgctg aatacggtgg ggggacatca agcagccatg
601 caaatgttaa aagataccat caatgaagag gctgcagaat gggatagatt acatccagta
661 catgcggggc ctattgcacc aggccaaatg agagaaccaa ggggaagtga catagcagga
721 actactagta cccttcagga acaaatagca tggatgacaa ataacccacc tattccagtg
781 ggagacatct ataaaagatg gataattctg gggttaaata aaatagtaag aatgtatagc
841 cctgtcagca ttttggacat aaaacaaggg ccaaaggaac cctttagaga ctatgtagac
901 cggttcttta aaactctaag agccgaacaa gctacacaag aggtaaaaaa ttggatgaca
961 gacaccttgt tggtccaaaa tgcgaaccca gattgtaaga ccattttaag ggcattagga
1021 ccaggggctt cattagagga aatgatgaca gcatgtcagg gagtgggagg acctggccac
//
last modified: Tue May 31 10:56 2022