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LOCUS	    EU698133		    1080 bp    RNA     linear	VRL 03-JUN-2008
DEFINITION  HIV-1 isolate 20492SASA3804XXxxxxxiDDDD1pcJS24XXXX from South
	    Africa gag protein (gag) gene, partial cds
ACCESSION   EU698133
VERSION     EU698133.1 GI:189172751
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1080)
            Show all sequences for reference 1
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     HLA class I-driven evolution of human immunodeficiency virus type 1
	    subtype c proteome: immune escape and viral load.
  JOURNAL   J. Virol.. 82(13); 6434-46 (2008)
  PUBMED    18434400
REFERENCE   2 (bases 1 to 1080)
            Show all sequences for reference 2
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2008) Dept of Microbiology, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..1080
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="20492SASA3804XXxxxxxiDDDD1pcJS24XXXX"
		     /isolation_source="29353 patient_id 3804 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
     gene	     1..>1080
		     /gene="gag"
     CDS	     1..>1080
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACD80623.1"
		     /db_xref="GI:189172752"
		     /translation="MGARASVLRGEKLDTWEKIRLRPGGRKKYRLKHIVWASRELERF
		     ALNPGLLETSEGCKQIMAQLQPALQTGTEEIKSLFNTVATLYCVHRRIEVQDTKEALD
		     KIEEEQNKSQQKAQSQKAQQAKAADGTVSQNYPIVQNLQGQMVHQAISPRTLNAWVKV
		     IEEKAFSPEVIPMFTALSDGATPQDLNAMLNTVGGHQAAMQMLKDTINEEAAEWDRLH
		     PVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGDIYKRWIILGLNKIV
		     RMYSPVSILDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKT
		     ILRALGPGASLEEMMTACQGVGGPGH"
BASE COUNT	408 a	 200 c	  261 g    211 t
ORIGIN
       1 atgggtgcga gagcgtcagt attaagaggc gaaaaattag atacatggga aaaaattagg 
      61 ttaaggccag ggggaaggaa aaaatataga ttaaaacaca tagtatgggc aagcagggag 
     121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg taaacagatc 
     181 atggcacagc tacaaccagc tcttcagaca ggaacagagg aaattaaatc attattcaac 
     241 acagtagcaa ctctctattg tgtacataga aggatagagg tacaagacac caaggaagcc 
     301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aagcacaaag tcagaaagca 
     361 cagcaggcaa aagcggctga cggaacagtc agtcaaaatt atcctatagt gcagaatctc 
     421 caagggcaaa tggtacatca ggccatatca cctagaacat tgaatgcatg ggtaaaagta 
     481 atagaggaga aagcttttag cccagaggta atacccatgt ttacagcatt atcagatgga 
     541 gccaccccac aagatttaaa tgccatgctg aatacggtgg ggggacatca agcagccatg 
     601 caaatgttaa aagataccat caatgaagag gctgcagaat gggatagatt acatccagta 
     661 catgcggggc ctattgcacc aggccaaatg agagaaccaa ggggaagtga catagcagga 
     721 actactagta cccttcagga acaaatagca tggatgacaa ataacccacc tattccagtg 
     781 ggagacatct ataaaagatg gataattctg gggttaaata aaatagtaag aatgtatagc 
     841 cctgtcagca ttttggacat aaaacaaggg ccaaaggaac cctttagaga ctatgtagac 
     901 cggttcttta aaactctaag agccgaacaa gctacacaag aggtaaaaaa ttggatgaca 
     961 gacaccttgt tggtccaaaa tgcgaaccca gattgtaaga ccattttaag ggcattagga 
    1021 ccaggggctt cattagagga aatgatgaca gcatgtcagg gagtgggagg acctggccac 
//
last modified: Tue May 31 10:56 2022


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