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LOCUS EU698116 392 bp RNA linear VRL 03-JUN-2008
DEFINITION HIV-1 isolate 20475SASA3881XXxxxxxiDDDD1pcHS59XXXX from South
Africa envelope glycoprotein (env) gene, partial cds
ACCESSION EU698116
VERSION EU698116.1 GI:189174049
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 392)
Show all sequences for reference 1
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE HLA class I-driven evolution of human immunodeficiency virus type 1
subtype c proteome: immune escape and viral load.
JOURNAL J. Virol.. 82(13); 6434-46 (2008)
PUBMED 18434400
REFERENCE 2 (bases 1 to 392)
Show all sequences for reference 2
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2008) Dept of Microbiology, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..392
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="20475SASA3881XXxxxxxiDDDD1pcHS59XXXX"
/isolation_source="29430 patient_id 3881 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/PCR_primers="fwd_name: DR7, fwd_seq:
tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
ggtcacttctccaattgtccttcatatttcctc"
gene <1..>392
/gene="env"
CDS <1..>392
/gene="env"
/note="V3V4"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACD81352.1"
/db_xref="GI:189174050"
/translation="TKTIIVHLNESVAIVCARPNNNTRQSMRIGPGQTFYATGDIIGD
IRQAHCNISGEKWNQTLDKVKEKLKEHYNKTIIFANSSGGDPEVTTHSFNCRGEFFYC
NTTSLFPANGSVPNKTITLPCRIKQIIN"
BASE COUNT 169 a 69 c 67 g 87 t
ORIGIN
1 ataccaaaac aataatagta catcttaatg aatctgtagc cattgtgtgc gcaagaccca
61 acaataatac aagacaaagt atgaggatag gaccaggaca aacattctat gcaacaggtg
121 acataatagg agacataaga caagcacatt gtaacattag tggagaaaaa tggaaccaaa
181 ctttagataa ggtaaaggag aaattaaaag aacactacaa taaaacaata atctttgcaa
241 attcctcagg aggggaccca gaagttacaa cacatagttt taattgtaga ggagaatttt
301 tctattgcaa tacaacaagc ttgtttccag ctaatggaag tgtgccaaac aaaaccatca
361 cactcccatg cagaataaaa caaattataa ac
//
last modified: Tue May 31 10:56 2022