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LOCUS	    EU698116		     392 bp    RNA     linear	VRL 03-JUN-2008
DEFINITION  HIV-1 isolate 20475SASA3881XXxxxxxiDDDD1pcHS59XXXX from South
	    Africa envelope glycoprotein (env) gene, partial cds
ACCESSION   EU698116
VERSION     EU698116.1 GI:189174049
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 392)
            Show all sequences for reference 1
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     HLA class I-driven evolution of human immunodeficiency virus type 1
	    subtype c proteome: immune escape and viral load.
  JOURNAL   J. Virol.. 82(13); 6434-46 (2008)
  PUBMED    18434400
REFERENCE   2 (bases 1 to 392)
            Show all sequences for reference 2
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2008) Dept of Microbiology, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..392
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="20475SASA3881XXxxxxxiDDDD1pcHS59XXXX"
		     /isolation_source="29430 patient_id 3881 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /PCR_primers="fwd_name: DR7, fwd_seq:
		     tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
		     ggtcacttctccaattgtccttcatatttcctc"
     gene	     <1..>392
		     /gene="env"
     CDS	     <1..>392
		     /gene="env"
		     /note="V3V4"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACD81352.1"
		     /db_xref="GI:189174050"
		     /translation="TKTIIVHLNESVAIVCARPNNNTRQSMRIGPGQTFYATGDIIGD
		     IRQAHCNISGEKWNQTLDKVKEKLKEHYNKTIIFANSSGGDPEVTTHSFNCRGEFFYC
		     NTTSLFPANGSVPNKTITLPCRIKQIIN"
BASE COUNT	169 a	  69 c	   67 g     87 t
ORIGIN
       1 ataccaaaac aataatagta catcttaatg aatctgtagc cattgtgtgc gcaagaccca 
      61 acaataatac aagacaaagt atgaggatag gaccaggaca aacattctat gcaacaggtg 
     121 acataatagg agacataaga caagcacatt gtaacattag tggagaaaaa tggaaccaaa 
     181 ctttagataa ggtaaaggag aaattaaaag aacactacaa taaaacaata atctttgcaa 
     241 attcctcagg aggggaccca gaagttacaa cacatagttt taattgtaga ggagaatttt 
     301 tctattgcaa tacaacaagc ttgtttccag ctaatggaag tgtgccaaac aaaaccatca 
     361 cactcccatg cagaataaaa caaattataa ac
//
last modified: Tue May 31 10:56 2022


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