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LOCUS EU698094 404 bp RNA linear VRL 03-JUN-2008
DEFINITION HIV-1 isolate 20460SASA3866XXxxxxxiDDDD1pcHS59XXXX from South
Africa envelope glycoprotein (env) gene, partial cds
ACCESSION EU698094
VERSION EU698094.1 GI:189174005
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 404)
Show all sequences for reference 1
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE HLA class I-driven evolution of human immunodeficiency virus type 1
subtype c proteome: immune escape and viral load.
JOURNAL J. Virol.. 82(13); 6434-46 (2008)
PUBMED 18434400
REFERENCE 2 (bases 1 to 404)
Show all sequences for reference 2
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2008) Dept of Microbiology, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..404
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="20460SASA3866XXxxxxxiDDDD1pcHS59XXXX"
/isolation_source="29415 patient_id 3866 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/PCR_primers="fwd_name: DR7, fwd_seq:
tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
ggtcacttctccaattgtccttcatatttcctc"
gene <1..>404
/gene="env"
CDS <1..>404
/gene="env"
/note="V3V4"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACD81330.1"
/db_xref="GI:189174006"
/translation="AETIIVHLNDSVNIMCTRPNNNTRRGIGIGPGQTFFATDAIIGD
IRQAHCNVNRQHWTKTLKEVRKILEERFNKAITFNTSAGGDLEITTHSFNCRGEFFYC
NTSGLFNDSKHNETENNSTNITLPCRIKQIIN"
BASE COUNT 174 a 70 c 65 g 95 t
ORIGIN
1 atgctgaaac aataatagta caccttaatg attctgtaaa tattatgtgt acaagaccca
61 acaataacac aagaagaggt atagggatag gaccaggaca aacattcttt gcaacagatg
121 ccataatagg agacataaga caagcacatt gtaacgttaa tagacagcac tggactaaaa
181 ctctaaaaga ggtaagaaaa attttagaag aacgcttcaa taaagcaata acctttaaca
241 catctgcagg aggggaccta gaaattacaa cacatagctt taattgtaga ggagaatttt
301 tctattgcaa tacatcagga ctgtttaatg attctaaaca caatgagaca gaaaataatt
361 caaccaacat cacacttcca tgcagaataa aacaaattat aaac
//
last modified: Tue May 31 10:56 2022