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LOCUS	    EU698094		     404 bp    RNA     linear	VRL 03-JUN-2008
DEFINITION  HIV-1 isolate 20460SASA3866XXxxxxxiDDDD1pcHS59XXXX from South
	    Africa envelope glycoprotein (env) gene, partial cds
ACCESSION   EU698094
VERSION     EU698094.1 GI:189174005
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 404)
            Show all sequences for reference 1
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     HLA class I-driven evolution of human immunodeficiency virus type 1
	    subtype c proteome: immune escape and viral load.
  JOURNAL   J. Virol.. 82(13); 6434-46 (2008)
  PUBMED    18434400
REFERENCE   2 (bases 1 to 404)
            Show all sequences for reference 2
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2008) Dept of Microbiology, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..404
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="20460SASA3866XXxxxxxiDDDD1pcHS59XXXX"
		     /isolation_source="29415 patient_id 3866 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /PCR_primers="fwd_name: DR7, fwd_seq:
		     tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
		     ggtcacttctccaattgtccttcatatttcctc"
     gene	     <1..>404
		     /gene="env"
     CDS	     <1..>404
		     /gene="env"
		     /note="V3V4"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACD81330.1"
		     /db_xref="GI:189174006"
		     /translation="AETIIVHLNDSVNIMCTRPNNNTRRGIGIGPGQTFFATDAIIGD
		     IRQAHCNVNRQHWTKTLKEVRKILEERFNKAITFNTSAGGDLEITTHSFNCRGEFFYC
		     NTSGLFNDSKHNETENNSTNITLPCRIKQIIN"
BASE COUNT	174 a	  70 c	   65 g     95 t
ORIGIN
       1 atgctgaaac aataatagta caccttaatg attctgtaaa tattatgtgt acaagaccca 
      61 acaataacac aagaagaggt atagggatag gaccaggaca aacattcttt gcaacagatg 
     121 ccataatagg agacataaga caagcacatt gtaacgttaa tagacagcac tggactaaaa 
     181 ctctaaaaga ggtaagaaaa attttagaag aacgcttcaa taaagcaata acctttaaca 
     241 catctgcagg aggggaccta gaaattacaa cacatagctt taattgtaga ggagaatttt 
     301 tctattgcaa tacatcagga ctgtttaatg attctaaaca caatgagaca gaaaataatt 
     361 caaccaacat cacacttcca tgcagaataa aacaaattat aaac
//
last modified: Tue May 31 10:56 2022


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