HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EU693584		    1212 bp    RNA     linear	VRL 02-JUN-2008
DEFINITION  HIV-1 isolate 7 from USA pol protein (pol) gene, partial cds
ACCESSION   EU693584
VERSION     EU693584.1 GI:189096714
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Little,S.J., Holte,S., Routy,J.P., Daar,E.S., Markowitz,M.,
	    Collier,A.C., Koup,R.A., Mellors,J.W., Connick,E., Conway,B.,
	    Kilby,M., Wang,L., Whitcomb,J.M., Hellmann,N.S. and Richman,D.D.
  TITLE     Antiretroviral-drug resistance among patients recently infected
	    with HIV
  JOURNAL   N. Engl. J. Med. 347 (6), 385-394 (2002)
  PUBMED    12167680
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Little,S.J., Holte,S. and Richman,D.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2008) Medicine and Pathology, University of
	    California, San Diego, UCSD Antiviral Research Center, 150 W.
	    Washington St., San Diego, CA 92103, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="7"
		     /isolation_source="acutely-infected patient"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="1997"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACD76124.1"
		     /db_xref="GI:189096715"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMELPGRWKP
		     KMIGGIGGFIKVRQYDQVSIEICGHKVIGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVRLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVV
		     PLTKEAELELAE"
BASE COUNT	477 a	 203 c	  255 g    277 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagatatgga gttgccagga 
     121 aggtggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caggtatcca tagaaatctg cggacataaa gttataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gctgcactct aaattttccc 
     301 attagtccta ttgaaactgt accagtaaga ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag cactaaatgg agaaaattag tagacttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagagttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatctgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa 
     901 atagaggaac tgagacaaca tctattgaag tggggattta ccacaccaga caaaaaacat 
     961 caaaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 caacctatag tactgccaga aaaggacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaggca attatgtaaa 
    1141 ctccttaggg gaaccaaagc actaacagaa gtagtaccac taacaaaaga agcagagcta 
    1201 gaactagcag aa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health