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LOCUS EU636331 1302 bp RNA linear VRL 19-MAY-2008
DEFINITION HIV-1 isolate 01-0512-2002/21/10 from USA pol protein (pol) gene,
partial cds
ACCESSION EU636331
VERSION EU636331.1 GI:188037047
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Little,S.J., Frost,S.D., Wong,J.K., Smith,D.M., Pond,S.L.,
Ignacio,C.C., Parkin,N.T., Petropoulos,C.J. and Richman,D.D.
TITLE Persistence of Transmitted Drug Resistance among Subjects with
Primary Human Immunodeficiency Virus Infection
JOURNAL J. Virol. 82 (11), 5510-5518 (2008)
PUBMED 18353964
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Little,S.J., Frost,S.D.W., Wong,J.K., Smith,D.M., Kosakovsky
Pond,S.L., Ignacio,C.C. and Richman,D.D.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2008) University Of California San Diego, 9500
Gilman Drive, La Jolla, CA 92093, USA
REFERENCE 3 (bases 1 to 1302)
Show all sequences for reference 3
AUTHORS Parkin,N.T. and Pertopoulous,C.J.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2008) Monogram Biosciences, Inc, 345 Oyster Point
Blvd., South San Franscisco, CA 94080, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="01-0512-2002/21/10"
/db_xref="taxon:11676"
/country="USA"
/collection_date="21-Oct-2002"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACD46176.1"
/db_xref="GI:188037048"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRIKIEELREHLLRWGFTTPDKKHQKEHPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLIGKLNWASQIYAGIKVRQLCKLLRGAKALTEIV
PLTREAELELAENREILKVPVHGVYYDPSKDLIAELQKQEQG"
BASE COUNT 509 a 213 c 279 g 301 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatctg tgggcataaa gctataggta cagtgttaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacctt aaattttcct
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcag ttaggaatac cacatcccgc agggttaaag
601 aagaataaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtacac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatcttccaa
781 tgtagcatga caaaaatctt agaacctttt aggaaacaaa atccagacat agttatctat
841 cagtacatgg atgatttgta tgtaggatct gacttagaaa tagggcaaca tagaataaaa
901 atagaggaac taagggaaca tttgttaagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac atccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggacggtca atgacataca gaagttaata
1081 gggaaattaa attgggcaag tcagatttat gcagggatta aagtaaggca attatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa atagtaccac taacaagaga agcagagcta
1201 gaactggcag aaaacaggga gattctaaaa gtgccagtac atggagtgta ttatgaccca
1261 tcaaaagact taatagcaga attacagaag caggagcaag gc
//
last modified: Tue May 31 10:56 2022