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LOCUS	    EU636251		    1212 bp    RNA     linear	VRL 19-MAY-2008
DEFINITION  HIV-1 isolate 01-0180-2001/05/02 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   EU636251
VERSION     EU636251.1 GI:188036887
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Little,S.J., Frost,S.D., Wong,J.K., Smith,D.M., Pond,S.L.,
	    Ignacio,C.C., Parkin,N.T., Petropoulos,C.J. and Richman,D.D.
  TITLE     Persistence of Transmitted Drug Resistance among Subjects with
	    Primary Human Immunodeficiency Virus Infection
  JOURNAL   J. Virol. 82 (11), 5510-5518 (2008)
  PUBMED    18353964
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Little,S.J., Frost,S.D.W., Wong,J.K., Smith,D.M., Kosakovsky
	    Pond,S.L., Ignacio,C.C. and Richman,D.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2008) University Of California San Diego, 9500
	    Gilman Drive, La Jolla, CA 92093, USA
REFERENCE   3 (bases 1 to 1212)
            Show all sequences for reference 3
  AUTHORS   Parkin,N.T. and Pertopoulous,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2008) Monogram Biosciences, Inc, 345 Oyster Point
	    Blvd., South San Franscisco, CA 94080, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="01-0180-2001/05/02"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="05-Feb-2001"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACD46096.1"
		     /db_xref="GI:188036888"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMHLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGHKAVGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
		     LDXXFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQXPD
		     IXIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTEVI
		     QLTEEAELELAE"
BASE COUNT	475 a	 198 c	  251 g    280 t      8 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgca tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggyttta tcaaagtaag acagtatgat 
     181 cagatactca tagaaatatg tggacataaa gctgtaggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc 
     301 attagcccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaatyggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaawaaat cagtaacagt tctggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aahramttca ggaagtacac tgcatttacc atacccagtg taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaam atccagacat arttatttat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa 
     901 atagaggaac taagagaaca tctgttgagg tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagtc 
    1021 cagcctataa tgctgccaga aaaagatagc tggactgtca atgacataca gaagctagtg 
    1081 ggaaaattaa attgggcaag tcagatttat gcaggaatta aagtaagaca attatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtaatacaac taacagaaga agcagagcta 
    1201 gaactggcag aa
//
last modified: Tue May 31 10:56 2022


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