View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EU636251 1212 bp RNA linear VRL 19-MAY-2008
DEFINITION HIV-1 isolate 01-0180-2001/05/02 from USA pol protein (pol) gene,
partial cds
ACCESSION EU636251
VERSION EU636251.1 GI:188036887
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Little,S.J., Frost,S.D., Wong,J.K., Smith,D.M., Pond,S.L.,
Ignacio,C.C., Parkin,N.T., Petropoulos,C.J. and Richman,D.D.
TITLE Persistence of Transmitted Drug Resistance among Subjects with
Primary Human Immunodeficiency Virus Infection
JOURNAL J. Virol. 82 (11), 5510-5518 (2008)
PUBMED 18353964
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Little,S.J., Frost,S.D.W., Wong,J.K., Smith,D.M., Kosakovsky
Pond,S.L., Ignacio,C.C. and Richman,D.D.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2008) University Of California San Diego, 9500
Gilman Drive, La Jolla, CA 92093, USA
REFERENCE 3 (bases 1 to 1212)
Show all sequences for reference 3
AUTHORS Parkin,N.T. and Pertopoulous,C.J.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2008) Monogram Biosciences, Inc, 345 Oyster Point
Blvd., South San Franscisco, CA 94080, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="01-0180-2001/05/02"
/db_xref="taxon:11676"
/country="USA"
/collection_date="05-Feb-2001"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACD46096.1"
/db_xref="GI:188036888"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMHLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGHKAVGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
LDXXFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQXPD
IXIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTEVI
QLTEEAELELAE"
BASE COUNT 475 a 198 c 251 g 280 t 8 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgca tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggyttta tcaaagtaag acagtatgat
181 cagatactca tagaaatatg tggacataaa gctgtaggta cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc
301 attagcccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaatyggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaawaaat cagtaacagt tctggatgtg ggtgatgcat atttttcagt tcccttagat
661 aahramttca ggaagtacac tgcatttacc atacccagtg taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaam atccagacat arttatttat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa
901 atagaggaac taagagaaca tctgttgagg tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagtc
1021 cagcctataa tgctgccaga aaaagatagc tggactgtca atgacataca gaagctagtg
1081 ggaaaattaa attgggcaag tcagatttat gcaggaatta aagtaagaca attatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtaatacaac taacagaaga agcagagcta
1201 gaactggcag aa
//
last modified: Tue May 31 10:56 2022