HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EU618070		     864 bp    RNA     linear	VRL 29-JAN-2009
DEFINITION  HIV-1 isolate 1129 from Cameroon pol protein (pol) gene, partial
	    cds
ACCESSION   EU618070
VERSION     EU618070.1 GI:194273718
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 864)
            Show all sequences for reference 1
  AUTHORS   Brennan,C.A., Bodelle,P., Coffey,R., Devare,S.G., Golden,A.,
	    Hackett,J.J., Harris,B., Holzmayer,V., Luk,K.-C., Schochetman,G.,
	    Swanson,P., Yamaguchi,J., Vallari,A., Ndembi,N., Ngansop,C.,
	    Makamche,F., Mbanya,D., Gurtler,L.G., Zekeng,L. and Kaptue,L.
  TITLE     The prevalence of diverse HIV-1 strains was stable in Cameroonian
	    blood donors from 1996 to 2004.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 49(4); 432-9 (2008)
  PUBMED    18931623
REFERENCE   2 (bases 1 to 864)
            Show all sequences for reference 2
  AUTHORS   Brennan,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2008) 09NG, Abbott Diagnostics, 100 Abbott Park
	    Rd, Abbott Park, IL 60064-6015, USA
COMMENT     Subtype assigned by HIV database using RIP [JM 1/11].
FEATURES             Location/Qualifiers
     source	     1..864
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1129"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /note="collected in 2003-2004"
     gene	     <1..>864
		     /gene="pol"
     CDS	     <1..>864
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACF37529.1"
		     /db_xref="GI:194273719"
		     /translation="FLDGIDKAQEDHERYHSNWRTMASDFNLPPIVAKEIVACCDKCQ
		     LKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVITAETGQETAYFIL
		     KLAGRWPVKVIHTDNGSNFTSGAVKAACWWAGIQQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQIT
		     KIQNFRVYYRDSRDPVWKGPAKLLWKGEGAVVIKDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVAGRQDED"
BASE COUNT	340 a	 128 c	  217 g    179 t
ORIGIN
       1 tttttagatg ggatagataa ggctcaagag gaccatgaaa gatatcacag caattggagg 
      61 acaatggcta gtgattttaa tctgccacct atagtagcaa aggaaatagt ggcctgctgc 
     121 gataaatgtc aactaaaagg ggaagccata catggacaag tagactgtag tccagggata 
     181 tggcaattag attgcacaca tctagaagga aaagtaatcc tggtagcagt ccatgtggct 
     241 agtggctata tagaagcaga agttatcaca gcagaaacag gacaggagac agcatacttt 
     301 atactaaaat tagcaggaag gtggccagta aaagtaatac acacagataa tggcagcaat 
     361 ttcaccagtg gtgcagttaa agcagcttgt tggtgggcag gtatccaaca ggaatttgga 
     421 atcccctaca atccccaaag tcaaggagta gtggaatcta tgaataaaga attaaagaaa 
     481 atcatagggc aagtaagaga gcaagctgaa caccttaaaa cagcagtaca aatggcagta 
     541 ttcattcaca attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata 
     601 atagacataa tagcaacaga catacaaact aaagaattac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagagacagc agagacccag tgtggaaagg accagcaaaa 
     721 ctactctgga aaggtgaagg ggcagtagta ataaaggaca atagtgatat aaaagtagta 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaggta gacaggatga ggat
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health