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LOCUS EU575019 2550 bp DNA linear VRL 16-JUN-2008
DEFINITION HIV-1 isolate 1006.11_C13 from USA envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION EU575019
VERSION EU575019.1 GI:190171693
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2550)
Show all sequences for reference 1
AUTHORS Keele,B.F., Giorgi,E.E., Salazar-Gonzalez,J.F., Decker,J.M.,
Pham,K.T., Salazar,M.G., Sun,C., Grayson,T., Wang,S., Li,H.,
Wei,X., Jiang,C., Kirchherr,J.L., Gao,F., Anderson,J.A., Ping,L.H.,
Swanstrom,R., Tomaras,G.D., Blattner,W.A., Goepfert,P.A.,
Kilby,J.M., Saag,M.S., Delwart,E.L., Busch,M.P., Cohen,M.S.,
Montefiori,D.C., Haynes,B.F., Gaschen,B., Athreya,G.S., Lee,H.Y.,
Wood,N., Seoighe,C., Perelson,A.S., Bhattacharya,T., Korber,B.T.,
Hahn,B.H. and Shaw,G.M.
TITLE Identification and characterization of transmitted and early
founder virus envelopes in primary HIV-1 infection
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 105 (21), 7552-7557 (2008)
PUBMED 18490657
REFERENCE 2 (bases 1 to 2550)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J., Pham,K.T. and Keele,B.F.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2008) University of Alabama at Birmingham,
Department of Medicine, Kaul 806, 720 20th Street South,
Birmingham, AL 35294, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Wood,N., Bhattacharya,T., Keele,B.F., Giorgi,E., Liu,M.,
Gaschen,B., Daniels,M., Ferrari,G., Haynes,B.F., McMichael,A.,
Shaw,G.M., Hahn,B.H., Korber,B. and Seoighe,C.
TITLE HIV evolution in early infection: selection pressures, patterns of
insertion and deletion, and the impact of APOBEC.
JOURNAL PLoS. Pathog.. 5(5); e1000414 (2009)
PUBMED 19424423
COMMENT Annotation information was provided by the author. Some of
theinformation does not have GenBank feature identifiers and is
beingprovided in the comment section. Information in this section
issearchable in HIV Database at Los Alamos
(www.hiv.lanl.gov).##HIVDataBaseData-START##Patient cohort Source
Plasma DonorFiebig Stage 3Sequence Name 1006.11_C13Sample tissue
plasmaViral Load 1600000Patient sex MSequence Number 1609Risk
Factor SPDSubtype BSample Timepoint 11Sample date 06/05/97Patient
code 1006Sample city Fayetteville,NCDBID 3375911989Subtype
B##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2550
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1006.11_C13"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene 1..2550
/gene="env"
CDS 1..2550
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACE64006.1"
/db_xref="GI:190171697"
/translation="MRVMGIRRNYQHLWRWGIMLLGILMICSAAEKWVTVYYGVPVWK
EATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNDMVEQM
HEDIISLWDQSLKPCVKLTPLCVTLNCTDDLGNNSTNNSSWDKGEMKKCSFNITTSIR
GKMQKEYALFYKLDIVPIDNGKNDSTNTSYRLINCNTSVITQACPKITFEPIPIHYCA
PAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIVIRSENF
TNNAKTIIVQLKESVQINCTRPNNNTRKGIHIGPGRAFYATGQIIGDIKRAYCNISRT
KWNNTLIQVVRKLREQFGNKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTW
NANVTANSTEGNDTLILPCKIKQIINMWQEVGKAMYAPPIQGIISCSSNITGLLLTRD
GGSENRPNETFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKAKRRVVQREKRAIGM
GALFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGI
KQLQARVLALERYLKDQQLLGMWGCSGKLICTTTVPWNDSWSNKSLSDIWDNMTWMEW
EREINNYTSLIYTLIQESQSQQEKNELELLALDKWASLWNWFDISKWLWYIKIFIMIV
GGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDTSRQ
LAAGFLALLWVDLRSLCLFLYHRLRDLLLIVARIVELLGRRGWEALKYWWNLLQYWSQ
ELKNSAVSLFNATAIAVAEGTDRIIEAVQRTLRAIRHIPTRIRQGFERALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ACE64005.1"
/db_xref="GI:190171696"
/translation="ESDGDQEELSTLMEMGHHAPWDIDDL"
gene <2134..2408
/gene="rev"
CDS <2134..2408
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ACE64004.1"
/db_xref="GI:190171695"
/translation="PPPSSKGTRQARRNRRRRWRERQRHIQAISSWILSTSLGRPTEP
VPLPLPPLERLTLDCSEDCGTSGTQGVGSPQVLVESPAVLESGTKE"
gene <2134..2224
/gene="tat"
CDS <2134..2224
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ACE64003.1"
/db_xref="GI:190171694"
/translation="PTSQLQGDPTGPKESKKKVERETETHPGN"
BASE COUNT 894 a 443 c 595 g 618 t
ORIGIN
1 atgagagtga tggggatcag gaggaattat caacacttat ggagatgggg catcatgctc
61 cttgggatat tgatgatctg tagtgctgca gagaaatggg tcacagtcta ttatggggta
121 cctgtgtgga aagaagcaac caccactcta ttttgtgcat cagatgctaa agcatatgat
181 acagaggtac ataatgtttg ggccacacat gcctgtgtac ccacagaccc caacccacaa
241 gaaatagtat tgggaaatgt gacagaaaat tttaacatgt ggaaaaatga catggtagaa
301 caaatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg tgtaaaatta
361 actccactct gtgttacttt aaattgcact gatgatttgg ggaataatag tactaacaac
421 agtagttggg acaagggaga gatgaaaaaa tgctctttca atatcaccac aagcataaga
481 ggtaagatgc agaaagaata tgcacttttt tataaacttg atatagtacc aatagataat
541 ggtaagaatg atagtaccaa taccagctat aggttgataa actgtaacac ctcagtcatt
601 acacaggcct gtccaaagat aacctttgag ccaattccaa tacattactg tgccccggct
661 ggttttgcga ttctaaagtg taacaataag acgttcaatg gaacaggacc atgtacaaat
721 gtcagcacag tacaatgtac acatggaatt aagccagtag tgtcaactca actgctgtta
781 aatggcagtc tagcagaaga agatatagta attagatctg agaatttcac gaacaatgct
841 aaaaccataa tagtacagct gaaagaatct gtacaaatta attgtacaag acctaacaac
901 aatacaagaa aaggtataca tataggacca gggagagcat tttatgcaac aggacaaata
961 ataggagata taaaaagagc atattgtaac attagtagaa caaagtggaa caacacttta
1021 atacaggtag ttagaaaatt aagagaacaa tttgggaata aaacaatagt ctttaatcaa
1081 tcctcaggag gggacccaga aattgtaatg cacagcttta attgtggagg ggaatttttc
1141 tactgtaata caacacaact gtttaatagt acttggaatg ctaatgttac tgcaaatagc
1201 acggaaggaa atgacaccct catactccca tgcaaaataa aacaaattat aaacatgtgg
1261 caagaggtag gaaaagcaat gtatgcccct cccatccaag ggataattag ctgttcatca
1321 aatatcacag ggctattatt aacaagagat ggtggaagtg aaaacaggcc taacgagacc
1381 ttcagacctg gaggaggaga tatgagggac aattggagaa gtgaattata taaatataaa
1441 gtagtacaaa ttgaaccact aggagtagca cccaccaagg caaaaagaag agtggtgcag
1501 agagaaaaaa gagcaatagg aatgggagcg ttgttccttg ggttcttggg agcagcagga
1561 agcactatgg gcgcagcgtc agtgacgctg acggtacagg ccagacaatt attgtctggt
1621 atagtgcaac agcaaaacaa tttgctgaag gctattgagg cgcaacagca tctgttgcaa
1681 ctcacagtct ggggcatcaa gcagctccag gcaagagtcc tggctttgga aagataccta
1741 aaggatcaac agctcctagg gatgtggggt tgctctggaa aactcatctg caccactact
1801 gtgccttgga atgatagttg gagtaataaa tctctaagtg atatttggga taacatgacc
1861 tggatggagt gggaaagaga aattaacaat tacacaagtt taatatacac cttaattcaa
1921 gaatcgcaga gccaacaaga aaaaaatgaa ctagaattat tggcattgga taagtgggca
1981 agcctgtgga attggtttga catatcaaaa tggctgtggt atataaaaat attcataatg
2041 atagtaggag gcttaatagg tttaagaata gtttttactg tgctttctat agtgaataga
2101 gttaggcagg gatactcacc attgtcattt cagacccacc tcccagctcc aaggggaccc
2161 gacaggcccg aaggaatcga agaagaaggt ggagagagag acagagacac atccaggcaa
2221 ttagcagctg gattcttagc acttctctgg gtcgacctac ggagcctgtg cctcttcctc
2281 taccaccgct tgagagactt actcttgatt gtagcgagga ttgtggaact tctgggacgc
2341 agggggtggg aagccctcaa gtattggtgg aatctcctgc agtattggag tcaggaacta
2401 aagaatagtg ctgttagctt gttcaatgct acagcaatag cagtagctga ggggacagat
2461 aggattatag aagcagtaca aagaactctt agagctattc gccacatacc tacaagaata
2521 agacagggct ttgaaagggc tttgctataa
//
last modified: Tue May 31 10:56 2022