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LOCUS EU574960 2568 bp DNA linear VRL 16-JUN-2008
DEFINITION HIV-1 isolate 1001.07_A5 from USA envelope glycoprotein (env) gene,
complete cds; vpu protein (vpu) and rev protein (rev) genes,
partial cds; and tat pseudogene, partial sequence
ACCESSION EU574960
VERSION EU574960.1 GI:190171445
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2568)
Show all sequences for reference 1
AUTHORS Keele,B.F., Giorgi,E.E., Salazar-Gonzalez,J.F., Decker,J.M.,
Pham,K.T., Salazar,M.G., Sun,C., Grayson,T., Wang,S., Li,H.,
Wei,X., Jiang,C., Kirchherr,J.L., Gao,F., Anderson,J.A., Ping,L.H.,
Swanstrom,R., Tomaras,G.D., Blattner,W.A., Goepfert,P.A.,
Kilby,J.M., Saag,M.S., Delwart,E.L., Busch,M.P., Cohen,M.S.,
Montefiori,D.C., Haynes,B.F., Gaschen,B., Athreya,G.S., Lee,H.Y.,
Wood,N., Seoighe,C., Perelson,A.S., Bhattacharya,T., Korber,B.T.,
Hahn,B.H. and Shaw,G.M.
TITLE Identification and characterization of transmitted and early
founder virus envelopes in primary HIV-1 infection
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 105 (21), 7552-7557 (2008)
PUBMED 18490657
REFERENCE 2 (bases 1 to 2568)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J., Pham,K.T. and Keele,B.F.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2008) University of Alabama at Birmingham,
Department of Medicine, Kaul 806, 720 20th Street South,
Birmingham, AL 35294, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Wood,N., Bhattacharya,T., Keele,B.F., Giorgi,E., Liu,M.,
Gaschen,B., Daniels,M., Ferrari,G., Haynes,B.F., McMichael,A.,
Shaw,G.M., Hahn,B.H., Korber,B. and Seoighe,C.
TITLE HIV evolution in early infection: selection pressures, patterns of
insertion and deletion, and the impact of APOBEC.
JOURNAL PLoS. Pathog.. 5(5); e1000414 (2009)
PUBMED 19424423
COMMENT Annotation information was provided by the author. Some of
theinformation does not have GenBank feature identifiers and is
beingprovided in the comment section. Information in this section
issearchable in HIV Database at Los Alamos
(www.hiv.lanl.gov).##HIVDataBaseData-START##Patient cohort Source
Plasma DonorFiebig Stage 3Sequence Name 1001.07_A5Sample tissue
plasmaViral Load 210000Patient sex FSequence Number 2233Risk Factor
SPDSubtype BSample Timepoint 07Sample date 02/12/97Patient code
1001Sample city St.Louis,MODBID 5590884Subtype
B##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2568
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1001.07_A5"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene 1..2568
/gene="env"
CDS 1..2568
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACE63816.1"
/db_xref="GI:190171448"
/translation="MRVKGIKKNYQHWWRWGTMLTMLLGILMICSANEKLWVTVYYGV
PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEVVMKNVTENYNMWKNNM
VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLPNGNYTNNGSVGAMEKGEMKNCSF
KVTTHMRDKMQKEYALLYKLDIIQTEDNSSYRLISCNTSSVTQACPKVSFEPIPIHYC
APAGFAILKCNQKNFTGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSEN
FTNSAKIIIVQLKETVKIDCTRPNNNTRKSINIGPGRAFYATGEIIGDIRQAHCNLSG
TLWNKTLHQIAKKLGEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNTTQLFGST
WEFNSTWNATNNSTGNDTITLPCRIKQFINMWQEVGKAMYAPPIKGPIKCLSNITGIL
LTRDGGNGNNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKR
AVLGGLGAVFIGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQ
LTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTSVPWNASWSNKSLDKIWNN
MTWMEWEKEIDNYTGLIYSLIEESQNQQEKNEQELLELDKWASLWNWFNITHWLWYIK
IFIIIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPTPRGPDRPEGIEEEGGERD
KDRSVRLVDGFLALIWDDLRSLCLFSYHHLRDLLLTVTRIVELLGRRGWEALKYWWNL
LQYWSQELKSSAISLLNATAIAVAEGTDRVIEIVQRACRAILHIPRRIRQGLERLLL"
gene <1..92
/gene="vpu"
CDS <1..92
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ACE63815.1"
/db_xref="GI:190171447"
/translation="ESEGDQEELSALVEMGHYAHHAPWDINDL"
gene <2152..2426
/gene="rev"
CDS <2152..2426
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ACE63814.1"
/db_xref="GI:190171446"
/translation="PPPNPEGTRQARRNRRRRWRERQRQIREISGWILSTYLGRSAEP
VPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE"
gene <2152..2242
/gene="tat"
CDS <2152..2242
/gene="tat"
/pseudo="tat"
/codon_start="1"
/transl_table="1"
BASE COUNT 909 a 442 c 598 g 619 t
ORIGIN
1 atgagagtga aggggatcaa gaagaattat cagcactggt ggagatgggg cactatgctc
61 accatgctcc ttgggatatt aatgatctgt agtgctaatg aaaaattgtg ggtcacagtc
121 tattatgggg tacctgtgtg gaaggaagca accaccactc tattttgtgc atcagatgct
181 aaagcataca aaacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac
241 cccaacccac aagaagtagt aatgaaaaat gtgacagaaa attataacat gtggaaaaat
301 aacatggtag aacaaatgca tgaggatata atcagtttat gggatcaaag tctaaagcca
361 tgtgtaaaat taaccccact ctgtgttact ttaaattgca ctgacttacc gaatggtaat
421 tataccaata atggtagcgt gggagcaatg gagaaaggag aaatgaaaaa ctgctctttt
481 aaagttacca cacacatgag agataagatg caaaaagaat atgcattgtt gtataaactt
541 gatataatac aaacagagga taattccagc tacaggttga taagttgtaa cacctcaagt
601 gttacacaag cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtgccccg
661 gctggttttg cgattctaaa gtgtaatcaa aagaacttca ctggaacagg accatgtaca
721 aatgtcagca cagtacaatg tacacatgga attaggccag tagtatcaac tcaactgctg
781 ttaaatggca gtctagcaga agaagaggta gtaattagat ctgaaaattt cacaaacagt
841 gctaaaatca taatagtaca actgaaagaa actgtaaaaa ttgattgtac aagacccaac
901 aacaatacaa gaaaaagtat aaatatagga ccagggagag cattttatgc aacaggagaa
961 ataataggag atataagaca agcacattgt aaccttagtg ggacactatg gaataaaact
1021 ttacatcaga tagctaaaaa attaggagaa caatttggga ataaaacaat agtctttaat
1081 cactcctcag gaggggaccc agaaattgta atgcacagtt ttaattgtgg aggggaattt
1141 ttctattgta atacaacaca actgtttggt agtacttggg agtttaatag tacttggaat
1201 gctaccaata acagtacagg aaatgacaca atcacactcc catgcagaat aaaacaattt
1261 ataaacatgt ggcaagaagt aggaaaagca atgtatgccc ctcccatcaa aggaccaatt
1321 aaatgtttat caaatattac agggatacta ttaacaagag atggaggtaa tggtaataac
1381 acgaccgaga tcttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta
1441 tataaatata aagtagtaaa gattgaaccc ttaggagtag cacccactag ggcaaagaga
1501 agagtggtgc agagagaaaa aagagcagta ctagggggac tcggagctgt gttcattggg
1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcag taacgctgac ggtacaggcc
1621 agacaactac tgtctggtat agtgcaacag cagagcaatc tgctgagagc tattgaggcg
1681 caacagcatc tgttgcaact cacagtctgg ggcatcaagc agctccaggc aagagtccta
1741 gctgtagaaa gatacctaaa ggatcaacag ctcctgggaa tttggggttg ctctggaaaa
1801 ctcatctgca ccacttctgt gccttggaat gctagttgga gtaataaatc tctggataag
1861 atttggaata acatgacctg gatggagtgg gaaaaagaaa ttgataatta cacaggctta
1921 atatattcct taattgaaga atcacaaaac caacaagaaa agaatgaaca agaattatta
1981 gaattggata aatgggcaag tttgtggaat tggtttaaca taacacactg gctgtggtat
2041 ataaaaatat tcataataat agtaggaggc ttagtaggtc taagaatagt ttttgctgta
2101 ctttctatag tgaatagagt taggcaggga tactcaccat tatcgtttca gacccgcctc
2161 ccaaccccga ggggacccga caggcccgaa ggaatcgaag aagaaggtgg agagagagac
2221 aaagacagat ccgtgagatt agtggatgga ttcttagcac ttatctggga cgatctgcgg
2281 agcctgtgcc tcttcagcta ccaccacttg agagacttac tcttgactgt aacgaggatt
2341 gtggaacttc tgggacgcag ggggtgggaa gccctcaaat attggtggaa tctcctacag
2401 tattggagtc aggaactaaa gagtagtgct attagcttgc tcaacgccac agcgatagca
2461 gtagctgagg gaacagatag ggttatagaa atagtacaaa gagcctgtag agctattctc
2521 cacataccta gaagaataag acagggcttg gaaaggcttt tgctataa
//
last modified: Tue May 31 10:56 2022